Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22750 - ( RAD5 ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase acting on acid anhydrides in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding )
44 Proteins interacs with AT5G22750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G15240 | Predictedsynthetic growth defect | FSW = 0.0622
| Class C:nucleus | UNC-50 FAMILY PROTEIN |
AT1G05120 | PredictedPhenotypic Enhancement | FSW = 0.0261
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G26150 | Predictedsynthetic growth defect | FSW = 0.2775
| Class C:nucleus | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | Predictedtwo hybridPhenotypic Enhancementinterologs mappingPhenotypic Enhancementtwo hybrid | FSW = 0.2211
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G19210 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3053
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G46340 | PredictedGene fusion method | FSW = 0.0450
| Class C:nucleus | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.2350
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G11630 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1445
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G16890 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternEnriched domain pair | FSW = 0.0857
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G35940 | Predictedsynthetic growth defect | FSW = 0.3659
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT2G31970 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2643
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.1460
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT5G05490 | Predictedsynthetic growth defect | FSW = 0.0933
| Unknown | SYN1 (SYNAPTIC 1) |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.3042
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G28030 | Predictedsynthetic growth defect | FSW = 0.1463
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT3G05210 | PredictedPhenotypic Enhancement | FSW = 0.0919
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.2893
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2323
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.3167
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT3G05480 | Predictedsynthetic growth defect | FSW = 0.0594
| Unknown | RAD9 |
AT5G50680 | PredictedPhenotypic Enhancement | FSW = 0.0759
| Unknown | SAE1B (SUMO ACTIVATING ENZYME 1B) SUMO ACTIVATING ENZYME |
AT5G61460 | Predictedsynthetic growth defect | FSW = 0.0417
| Unknown | MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING |
AT1G23260 | PredictedPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.1764
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G44740 | PredictedPhenotypic Enhancement | FSW = 0.0779
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT1G55915 | PredictedPhenotypic Enhancement | FSW = 0.1396
| Unknown | ZINC ION BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.2226
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1060
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1304
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT3G02820 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1743
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G04730 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1841
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2440
| Unknown | NUCLEOTIDE BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.2035
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G24290 | Predictedsynthetic growth defect | FSW = 0.1073
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT4G30870 | Predictedsynthetic growth defect | FSW = 0.2121
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0948
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G40490 | Predictedsynthetic growth defect | FSW = 0.2013
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.2743
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G10930 | Predictedsynthetic growth defectEnriched domain pair | FSW = 0.3318
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1364
| Unknown | SGA2 |
AT4G25120 | PredictedSynthetic RescueSynthetic Rescuetwo hybrid | FSW = 0.3346
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT1G67500 | PredictedSynthetic Rescue | FSW = 0.1604
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G57870 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0362
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT1G08590 | PredictedGene fusion method | FSW = 0.0703
| Unknown | CLAVATA1 RECEPTOR KINASE (CLV1) |
AT1G63300 | PredictedGene fusion method | FSW = 0.0690
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454