Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22770 - ( alpha-ADR (alpha-adaptin) binding / protein binding / protein transporter )

32 Proteins interacs with AT5G22770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G43160

Experimental

Reconstituted Complex

in vitro

FSW = 0.0541

Class A:

plasma membrane

Class B:

vacuole

Class D:

nucleus (p = 0.78)

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT5G11710

Experimental

pull down

FSW = 0.0500

Class B:

vacuole

plastid

plasma membrane

golgi

cytoskeleton

Class D:

nucleus (p = 0.78)

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G05020

Experimental

Reconstituted Complex

FSW = 0.1429

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT5G35200

Predicted

in vitro

in vivo

FSW = 0.0250

Class C:

plasma membrane

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT4G11380

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1632

Class C:

plasma membrane

BETA-ADAPTIN PUTATIVE
AT5G22780

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0370

Class C:

plasma membrane

ADAPTIN FAMILY PROTEIN
AT1G21630

Predicted

in vivo

in vitro

FSW = 0.0435

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G22300

Predicted

Affinity Capture-MS

FSW = 0.0179

Class C:

plasma membrane

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.0132

Class C:

plasma membrane

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G22110

Predicted

Affinity Capture-MS

FSW = 0.0053

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G48190

Predicted

Protein-peptide

FSW = 0.0665

Unknown

ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT2G41380

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0154

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G18380

Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G40820

Predicted

Protein-peptide

FSW = 0.0145

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT1G23000

Predicted

Phenotypic Suppression

FSW = 0.0762

Unknown

HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN
AT1G47830

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

FSW = 0.0085

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT3G18370

Predicted

in vitro

FSW = 0.0556

Unknown

ATSYTF
AT5G12200

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1143

Unknown

DIHYDROPYRIMIDINASE / DHPASE / DIHYDROPYRIMIDINE AMIDOHYDROLASE / HYDANTOINASE (PYD2)
AT5G57200

Predicted

in vivo

in vitro

FSW = 0.0282

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT5G27620

Predicted

in vivo

FSW = 0.0068

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G63550

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

EXPRESSED IN GUARD CELL CULTURED CELL CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G487101) HAS 115795 BLAST HITS TO 50006 PROTEINS IN 1760 SPECIES ARCHAE - 230 BACTERIA - 10317 METAZOA - 57515 FUNGI - 12631 PLANTS - 4292 VIRUSES - 1075 OTHER EUKARYOTES - 29735 (SOURCE NCBI BLINK)
AT1G25420

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

UNKNOWN PROTEIN
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0349

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G53880Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0099

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT4G31985

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G13570

Predicted

interaction prediction

two hybrid

FSW = 0.0120

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G21170

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT3G48710

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0762

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G635502) HAS 48226 BLAST HITS TO 25734 PROTEINS IN 1103 SPECIES ARCHAE - 54 BACTERIA - 6881 METAZOA - 21026 FUNGI - 4604 PLANTS - 1514 VIRUSES - 306 OTHER EUKARYOTES - 13841 (SOURCE NCBI BLINK)
AT2G19710

Predicted

Affinity Capture-MS

FSW = 0.0714

Unknown

UNKNOWN PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454