Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22770 - ( alpha-ADR (alpha-adaptin) binding / protein binding / protein transporter )
32 Proteins interacs with AT5G22770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G43160 | ExperimentalReconstituted Complexin vitro | FSW = 0.0541
| Class A:plasma membraneClass B:vacuoleClass D:nucleus (p = 0.78) | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT5G11710 | Experimentalpull down | FSW = 0.0500
| Class B:vacuoleplastidplasma membranegolgicytoskeletonClass D:nucleus (p = 0.78) | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT1G05020 | ExperimentalReconstituted Complex | FSW = 0.1429
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT5G35200 | Predictedin vitroin vivo | FSW = 0.0250
| Class C:plasma membrane | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT4G11380 | Predictedin vitroAffinity Capture-MS | FSW = 0.1632
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT5G22780 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0370
| Class C:plasma membrane | ADAPTIN FAMILY PROTEIN |
AT1G21630 | Predictedin vivoin vitro | FSW = 0.0435
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0179
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0132
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G48190 | PredictedProtein-peptide | FSW = 0.0665
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0154
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G18380 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT5G40820 | PredictedProtein-peptide | FSW = 0.0145
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G23000 | PredictedPhenotypic Suppression | FSW = 0.0762
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G47830 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.0085
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT3G18370 | Predictedin vitro | FSW = 0.0556
| Unknown | ATSYTF |
AT5G12200 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1143
| Unknown | DIHYDROPYRIMIDINASE / DHPASE / DIHYDROPYRIMIDINE AMIDOHYDROLASE / HYDANTOINASE (PYD2) |
AT5G57200 | Predictedin vivoin vitro | FSW = 0.0282
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT5G27620 | Predictedin vivo | FSW = 0.0068
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G63550 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | EXPRESSED IN GUARD CELL CULTURED CELL CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G487101) HAS 115795 BLAST HITS TO 50006 PROTEINS IN 1760 SPECIES ARCHAE - 230 BACTERIA - 10317 METAZOA - 57515 FUNGI - 12631 PLANTS - 4292 VIRUSES - 1075 OTHER EUKARYOTES - 29735 (SOURCE NCBI BLINK) |
AT1G25420 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | UNKNOWN PROTEIN |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G31985 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G13570 | Predictedinteraction predictiontwo hybrid | FSW = 0.0120
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT3G48710 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0762
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G635502) HAS 48226 BLAST HITS TO 25734 PROTEINS IN 1103 SPECIES ARCHAE - 54 BACTERIA - 6881 METAZOA - 21026 FUNGI - 4604 PLANTS - 1514 VIRUSES - 306 OTHER EUKARYOTES - 13841 (SOURCE NCBI BLINK) |
AT2G19710 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454