Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22780 - ( adaptin family protein )
23 Proteins interacs with AT5G22780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G05020 | Experimentalinteraction detection methodmolecular sievingelectron microscopypull down | FSW = 0.1905
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0202
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G73230 | PredictedAffinity Capture-MS | FSW = 0.0098
| Class C:plasma membrane | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G45780 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complextwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerninterologs mappingPhenotypic Enhancementbiochemical | FSW = 0.0842
| Class C:plasma membrane | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G22770 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0370
| Class C:plasma membrane | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0165
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0261
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT3G16180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0176
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G80190 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0333
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G60980 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0774
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G30320 | Predictedbiochemical | FSW = 0.0440
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G28730 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0150
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G80460 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT3G26690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0192
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
AT3G49420 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0580
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.1109
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT4G33200 | PredictedAffinity Capture-MS | FSW = 0.1371
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454