Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22840 - ( protein kinase family protein )
61 Proteins interacs with AT5G22840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | Predictedtwo hybrid | FSW = 0.0364
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT1G56070 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G56000 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0054
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT4G01840 | PredictedSynthetic Rescue | FSW = 0.0303
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G64270 | Predictedtwo hybrid | FSW = 0.0170
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedSynthetic Lethality | FSW = 0.0293
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT1G24360 | Predictedbiochemical | FSW = 0.0208
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | SEC22 TRANSPORTER |
AT3G50670 | Predictedin vivoin vitro | FSW = 0.0157
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G54910 | Predictedbiochemical | FSW = 0.0087
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G02840 | Predictedin vitroin vivoCo-expression | FSW = 0.0364
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G54350 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT4G31180 | Predictedbiochemical | FSW = 0.0213
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT5G58290 | Predictedtwo hybridinteraction prediction | FSW = 0.0265
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G30970 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | SUF4 (SUPPRESSOR OF FRIGIDA4) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
AT5G14670 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G39930 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
AT5G55030 | Predictedtwo hybrid | FSW = 0.0146
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
AT5G57240 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) OXYSTEROL BINDING |
AT1G67500 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G12390 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | FIS1B (FISSION 1B) BINDING |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0045
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G63770 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
AT4G02430 | Predictedin vitroin vivobiochemicalin vivoin vitroAffinity Capture-MSReconstituted Complex | FSW = 0.0649
| Unknown | PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE |
AT4G36690 | Predictedbiochemicaltwo hybridbiochemicalPhenotypic Suppression | FSW = 0.0498
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G04130 | Predictedbiochemical | FSW = 0.0241
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G10580 | PredictedSynthetic Lethality | FSW = 0.0194
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17690 | Predictedbiochemical | FSW = 0.0250
| Unknown | UNKNOWN PROTEIN |
AT1G34150 | Predictedbiochemical | FSW = 0.0107
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G51710 | Predictedbiochemical | FSW = 0.0365
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54390 | Predictedbiochemical | FSW = 0.0145
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G54650 | Predictedbiochemical | FSW = 0.0278
| Unknown | METHYLTRANSFERASE |
AT2G16440 | Predictedbiochemical | FSW = 0.0179
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G17510 | Predictedbiochemical | FSW = 0.0089
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT2G28360 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G32730 | Predictedbiochemical | FSW = 0.0262
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11910 | Predictedbiochemical | FSW = 0.0206
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT4G09760 | Predictedbiochemical | FSW = 0.0326
| Unknown | CHOLINE KINASE PUTATIVE |
AT4G10310 | PredictedPhenotypic Enhancementinterologs mappingSynthetic Rescue | FSW = 0.0422
| Unknown | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER |
AT4G16630 | Predictedbiochemical | FSW = 0.0109
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G34910 | Predictedbiochemical | FSW = 0.0084
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G10260 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0171
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G62600 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | TRANSPORTIN-SR-RELATED |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | Predictedbiochemical | FSW = 0.0204
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G65990 | Predictedbiochemical | FSW = 0.0164
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT4G32660 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0168
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G44635 | Predictedinteraction prediction | FSW = 0.0099
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G43010 | Predictedinteraction prediction | FSW = 0.0392
| Unknown | RPT4A ATPASE |
AT3G44850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2210
| Unknown | PROTEIN KINASE-RELATED |
AT4G35500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0825
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G17530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2137
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G53030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0210
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT1G19880 | PredictedGene fusion method | FSW = 0.0345
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G33350 | PredictedGene fusion method | FSW = 0.0325
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454