Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23250 - ( succinyl-CoA ligase (GDP-forming) alpha-chain mitochondrial putative / succinyl-CoA synthetase alpha chain putative / SCS-alpha putative )

11 Proteins interacs with AT5G23250
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G03290

Predicted

Phenotypic Suppression

FSW = 0.0901

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT5G08300

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2395

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT2G20420

Predicted

Affinity Capture-MS

comigration in non denaturing gel electrophoresis

Affinity Capture-MS

FSW = 0.3363

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G66760

Predicted

pull down

FSW = 0.0909

Class C:

mitochondrion

SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE
AT1G61000

Predicted

two hybrid

FSW = 0.0368

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0923

Unknown

ATHM1 ENZYME ACTIVATOR
AT3G48750

Predicted

interaction prediction

FSW = 0.0101

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G03190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0546

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G39140

Predicted

pull down

FSW = 0.1303

Unknown

SVR1 (SUPPRESSOR OF VARIEGATION 1) RNA BINDING / PSEUDOURIDINE SYNTHASE
AT3G22310

Predicted

pull down

FSW = 0.0203

Unknown

PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT1G09020

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454