Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23260 - ( TT16 (TRANSPARENT TESTA16) transcription factor )
25 Proteins interacs with AT5G23260| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G24540
   | Experimental | FSW = 0.3584
| Class A:nucleusClass B:cytosolClass D:plastid (p = 0.78)nucleus (p = 0.78) | AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G69120
| Experimentaltwo hybrid | FSW = 0.4407
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT1G31640
| Experimentaltwo hybrid | FSW = 0.1735
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | AGL92 (AGAMOUS-LIKE 92) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G09960
| Experimental3 hybrid method3 hybrid method | FSW = 0.4444
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT1G02680
| Experimentalprotein array | FSW = 0.0046
| Class A:nucleusClass D:plastid (p = 0.78) | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G24260
| Experimentaltwo hybridtwo hybrid3 hybrid method3 hybrid method | FSW = 0.3472
| Class A:nucleusClass D:nucleus (p = 0.78) | SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G38620
| Experimental | FSW = 0.2153
| Class A:nucleusClass D:nucleus (p = 0.78) | MADS-BOX PROTEIN (AGL73) |
| AT5G15800
| Experimentaltwo hybridtwo hybrid | FSW = 0.3831
| Class A:nucleusClass D:nucleus (p = 0.78) | SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G02310
| Experimentaltwo hybridtwo hybrid | FSW = 0.2151
| Class A:nucleusClass D:nucleus (p = 0.78) | SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT2G03710
| Experimentaltwo hybrid | FSW = 0.2986
| Class A:nucleusClass D:nucleus (p = 0.78) | SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G18960
| Experimental3 hybrid method | FSW = 0.4356
| Class A:nucleusClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G48150
| Experimentaltwo hybrid | FSW = 0.2525
| Class A:nucleusClass D:nucleus (p = 0.78) | MADS-BOX PROTEIN (AGL74 ) |
| AT1G25280
| Experimental | FSW = 0.0726
| Class B:plasma membranenucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
| AT3G43810
| Experimentalprotein array | FSW = 0.0202
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
| AT1G66410
| Experimentalprotein array | FSW = 0.0163
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
| AT2G22540
| Experimental | FSW = 0.2374
| Class D:plastid (p = 0.78)nucleus (p = 0.78) | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
| AT2G45650
| Experimental | FSW = 0.4600
| Class D:nucleus (p = 0.78) | AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G58780
| Experimental3 hybrid method3 hybrid method | FSW = 0.4667
| Class D:nucleus (p = 0.78) | SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT1G46408
| Experimentaltwo hybrid | FSW = 0.1500
| Unknown | AGL97 (AGAMOUS-LIKE 97) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G62165
| Experimental | FSW = 0.4208
| Unknown | AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR |
| AT3G51920
| Experimentalprotein array | FSW = 0.0222
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
| AT2G41090
| Experimentalprotein array | FSW = 0.0058
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
| AT5G21274
| Experimentalprotein array | FSW = 0.0205
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
| AT1G77950
| PredictedGene fusion methodCo-expression | FSW = 0.1195
| Class C:nucleus | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
| AT1G01530
| PredictedGene fusion methodCo-expression | FSW = 0.0381
| Class C:nucleus | AGL28 (AGAMOUS-LIKE 28) DNA BINDING / TRANSCRIPTION FACTOR |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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