Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23395 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN chloroplast CONTAINS InterPro DOMAIN/s CHCH (InterProIPR010625) Has 224 Blast hits to 224 proteins in 106 species Archae - 0 Bacteria - 0 Metazoa - 109 Fungi - 94 Plants - 20 Viruses - 0 Other Eukaryotes - 1 (source NCBI BLink) )

8 Proteins interacs with AT5G23395
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G49880

Predicted

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1262

Unknown

ERV1/ALR FAMILY PROTEIN
AT3G46560

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0937

Unknown

TIM9 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G50400

Predicted

Affinity Capture-MS

FSW = 0.0618

Unknown

PORIN FAMILY PROTEIN
AT1G69750

Predicted

Affinity Capture-Western

FSW = 0.0697

Unknown

COX19 FAMILY PROTEIN
AT2G17790

Predicted

Affinity Capture-MS

FSW = 0.1113

Unknown

VPS35A (VPS35 HOMOLOG A)
AT3G47810

Predicted

Affinity Capture-MS

FSW = 0.0775

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454