Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23420 - ( HMGB6 transcription factor )
21 Proteins interacs with AT5G23420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0176
| Unknown | UNKNOWN PROTEIN |
AT1G74560 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0297
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G45970 | PredictedPhenotypic Enhancement | FSW = 0.0522
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G54280 | Predictedtwo hybrid | FSW = 0.0758
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT5G57015 | Predictedin vitro | FSW = 0.0249
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13445 | Predictedin vitro | FSW = 0.0088
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G16560 | Predictedin vitroin vivo | FSW = 0.1111
| Unknown | KAN (KANADI) TRANSCRIPTION FACTOR |
AT2G41460 | Predictedin vitroAffinity Capture-MS | FSW = 0.0655
| Unknown | ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0861
| Unknown | PRESENILIN FAMILY PROTEIN |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT5G42400 | PredictedPhenotypic Enhancement | FSW = 0.1026
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G60940 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G12280 | PredictedAffinity Capture-MSin vitro | FSW = 0.0127
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G19040 | Predictedin vitro | FSW = 0.1070
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT2G29390 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0570
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G01350 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G01830 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G10480 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0222
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT5G26110 | PredictedDosage Growth Defect | FSW = 0.0167
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454