Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23430 - ( transducin family protein / WD-40 repeat family protein )
8 Proteins interacs with AT5G23430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0100
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G80350 | Predictedtwo hybridin vivoin vitro | FSW = 0.0462
| Unknown | ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G51740 | PredictedGene fusion method | FSW = 0.2616
| Unknown | IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G08390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0656
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CUL4 RING UBIQUITIN LIGASE COMPLEX EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) WD40 REPEAT REGION (INTERPROIPR017986) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) WD40 REPEAT (INTERPROIPR001680) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN (TAIRAT5G234301) HAS 84267 BLAST HITS TO 30722 PROTEINS IN 748 SPECIES ARCHAE - 68 BACTERIA - 7813 METAZOA - 39755 FUNGI - 16342 PLANTS - 8110 VIRUSES - 6 OTHER EUKARYOTES - 12173 (SOURCE NCBI BLINK) |
AT2G39620 | PredictedGene fusion methodCo-expression | FSW = 0.2616
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G79490 | PredictedGene fusion method | FSW = 0.2616
| Unknown | EMB2217 (EMBRYO DEFECTIVE 2217) |
AT1G51870 | PredictedGene fusion method | FSW = 0.0618
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G38950 | PredictedGene fusion method | FSW = 0.2742
| Unknown | KINESIN MOTOR FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454