Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23540 - ( 26S proteasome regulatory subunit putative )
59 Proteins interacs with AT5G23540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0392
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G25490 | Experimentalbiochemical | FSW = 0.2310
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G59870 | Predictedinteraction prediction | FSW = 0.0816
| Unknown | PEN3 (PENETRATION 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CADMIUM ION TRANSMEMBRANE TRANSPORTER |
AT3G22630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2723
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G50850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT4G14800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2759
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G48830 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT1G45000 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4456
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G29310 | PredictedAffinity Capture-Western | FSW = 0.0248
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4400
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4529
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4744
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingColocalizationco-fractionationCo-fractionationAffinity Capture-WesternCo-expression | FSW = 0.4009
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G02230 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT1G53750 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4252
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3393
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G43810 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0045
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedReconstituted Complex | FSW = 0.0051
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.2611
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5091
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5364
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.4669
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4973
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G06720 | Predictedinterologs mapping | FSW = 0.0117
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT2G31970 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT1G16190 | PredictedAffinity Capture-MS | FSW = 0.2367
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5789
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.1510
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G16090 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G05780 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.2348
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0075
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G45620 | Predictedtwo hybridAffinity Capture-MSCo-expression | FSW = 0.0956
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G19006 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5795
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G29150 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3813
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedSynthetic LethalityCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3008
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.5124
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G78720 | PredictedAffinity Capture-Western | FSW = 0.0345
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3820
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridPhenotypic SuppressionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5684
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5178
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.2446
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G03150 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.2759
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT1G77470 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0294
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT3G12670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0937
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1175
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT5G09900 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5107
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4469
| Unknown | RPT4A ATPASE |
AT1G65650 | PredictedReconstituted Complexsynthetic growth defect | FSW = 0.1364
| Unknown | UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G21280 | Predictedsynthetic growth defect | FSW = 0.2090
| Unknown | UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G64750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3771
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT2G23420 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.1329
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT1G30820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1394
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G02690 | Predictedinterologs mapping | FSW = 0.0083
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT3G02760 | Predictedtwo hybridinteraction prediction | FSW = 0.0199
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ HISTIDINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454