Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23860 - ( TUB8 structural constituent of cytoskeleton )

11 Proteins interacs with AT5G23860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0078

Class A:

plasma membrane

nucleus

Class B:

vacuole

peroxisome

cytosol

cytoskeleton

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G20890

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8650

Class C:

plasma membrane

nucleus

TUB9 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT2G29550

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8299

Class C:

plasma membrane

nucleus

TUB7 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G62690

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.5739

Class C:

plasma membrane

nucleus

TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G12250

Predicted

Enriched domain pair

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3141

Class C:

plasma membrane

nucleus

TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G44340

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8650

Class C:

plasma membrane

nucleus

TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G20010

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3050

Class C:

plasma membrane

TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G61650

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.4676

Class C:

plasma membrane

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G75780

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8417

Unknown

TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G05620

Predicted

two hybrid

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.4783

Unknown

GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G62700Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.4687

Unknown

TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454