Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23880 - ( CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA binding / protein binding )

32 Proteins interacs with AT5G23880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G22220

Experimental

FSW = 0.0303

Class D:

cytosol (p = 0.67)

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G51660

Experimental

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

affinity technology

in vitro

FSW = 0.5489

Class D:

cytosol (p = 0.67)

CPSF160 NUCLEIC ACID BINDING
AT3G06560

Experimental

interaction detection method

FSW = 0.1572

Unknown

POLYNUCLEOTIDE ADENYLYLTRANSFERASE/ PROTEIN BINDING
AT1G61010

Experimental

two hybrid

pull down

pull down

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

in vitro

two hybrid

affinity technology

FSW = 0.5104

Unknown

CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT1G30460

Experimental

two hybrid

pull down

pull down

two hybrid

Reconstituted Complex

in vitro

FSW = 0.3056

Unknown

CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT2G25850

Experimental

pull down

interaction detection method

pull down

FSW = 0.1268

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT2G01730

Experimental

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-Western

in vitro

two hybrid

FSW = 0.2392

Unknown

ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING
AT5G60940

Experimental

FSW = 0.0665

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G13480

Experimental

two hybrid

Affinity Capture-MS

Affinity Capture-Western

two hybrid

affinity technology

FSW = 0.3344

Unknown

FY PROTEIN BINDING
AT5G01400

Experimental

Affinity Capture-MS

affinity technology

FSW = 0.0653

Unknown

ESP4 (ENHANCED SILENCING PHENOTYPE 4) BINDING
AT4G35840

Experimental

FSW = 0.0914

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G04680

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.2907

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT4G32850

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0222

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT1G73820

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

two hybrid

interaction prediction

Co-expression

FSW = 0.3178

Unknown

SSU72-LIKE FAMILY PROTEIN
AT4G35800

Predicted

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.0501

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0196

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT1G17680

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.2230

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G17980

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interologs mapping

FSW = 0.4538

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G54910

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1528

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0369

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT4G26840

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0039

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G16590

Predicted

two hybrid

FSW = 0.0417

Unknown

REV7 DNA BINDING
AT4G04885

Predicted

in vivo

in vitro

FSW = 0.3266

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT5G14530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2780

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G29400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1580

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G17410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4571

Unknown

ZINC ION BINDING
AT1G73840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5381

Unknown

ESP1 (ENHANCED SILENCING PHENOTYPE 1)
AT1G66500

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

in vivo

interaction prediction

FSW = 0.4322

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN
AT1G17760

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4375

Unknown

CSTF77 PROTEIN BINDING
AT4G15770

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0123

Unknown

RNA BINDING / PROTEIN BINDING
AT2G39840

Predicted

interaction prediction

FSW = 0.1028

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G47430

Predicted

interaction prediction

FSW = 0.4082

Unknown

ZINC ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454