Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23900 - ( 60S ribosomal protein L13 (RPL13D) )

74 Proteins interacs with AT5G23900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49010

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0310

Class C:

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G19640

Predicted

synthetic growth defect

FSW = 0.0093

Class C:

plasma membrane

ARA7 GTP BINDING
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.1130

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G07810

Predicted

Phenotypic Enhancement

FSW = 0.0118

Class C:

plasma membrane

ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT5G57490

Predicted

Affinity Capture-MS

FSW = 0.0141

Class C:

plasma membrane

VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL
AT3G22890

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0582

Class C:

plasma membrane

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.1010

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT4G28950

Predicted

Affinity Capture-MS

FSW = 0.0411

Class C:

plasma membrane

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT2G32670

Predicted

Phenotypic Enhancement

FSW = 0.0835

Class C:

plasma membrane

ATVAMP725
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.1536

Class C:

plasma membrane

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G12350

Predicted

Affinity Capture-MS

FSW = 0.0392

Class C:

plasma membrane

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.0922

Class C:

plasma membrane

ZINC ION BINDING
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.0787

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0110

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0159

Class C:

plasma membrane

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.0315

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G16660

Predicted

Phenotypic Enhancement

FSW = 0.0546

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT3G57990

Predicted

Synthetic Lethality

FSW = 0.0149

Unknown

UNKNOWN PROTEIN
AT5G10350

Predicted

Protein-peptide

Synthetic Rescue

FSW = 0.0694

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0879

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT2G39290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0872

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT2G29690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

two hybrid

FSW = 0.1786

Unknown

ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0046

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G10070

Predicted

Synthetic Rescue

FSW = 0.0329

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G48880

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0664

Unknown

PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G04460

Predicted

interologs mapping

FSW = 0.0583

Unknown

PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.0284

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT5G14170

Predicted

two hybrid

FSW = 0.0187

Unknown

CHC1
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G54350

Predicted

two hybrid

FSW = 0.0144

Unknown

EMB1967 (EMBRYO DEFECTIVE 1967)
AT1G09060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1330

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.1088

Unknown

NFU4 STRUCTURAL MOLECULE
AT2G30160

Predicted

Phenotypic Enhancement

FSW = 0.0547

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G13650

Predicted

Affinity Capture-Western

FSW = 0.0900

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT2G14580

Predicted

Synthetic Lethality

FSW = 0.0108

Unknown

ATPRB1
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.0632

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G07820

Predicted

Phenotypic Enhancement

FSW = 0.0261

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G45280

Predicted

Affinity Capture-MS

FSW = 0.1892

Unknown

SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.0649

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G27350Predicted

two hybrid

FSW = 0.0173

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT5G61330

Predicted

two hybrid

FSW = 0.0098

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G25800

Predicted

two hybrid

FSW = 0.0456

Unknown

EXONUCLEASE FAMILY PROTEIN
AT1G11530

Predicted

synthetic growth defect

FSW = 0.0873

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20693

Predicted

Phenotypic Enhancement

FSW = 0.0257

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.0647

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.0602

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1481

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.0335

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G32160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0373

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT2G33560

Predicted

Reconstituted Complex

Synthetic Rescue

Reconstituted Complex

two hybrid

Synthetic Rescue

FSW = 0.0360

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G38600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1600

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G18850

Predicted

Phenotypic Enhancement

FSW = 0.0239

Unknown

LPAT5 ACYLTRANSFERASE
AT3G54085

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK)
AT3G59790

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0879

Unknown

ATMPK10 MAP KINASE/ KINASE
AT3G62760

Predicted

Phenotypic Enhancement

Affinity Capture-Western

Phenotypic Enhancement

Synthetic Lethality

Reconstituted Complex

interologs mapping

Synthetic Rescue

FSW = 0.0443

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G25860

Predicted

Affinity Capture-MS

FSW = 0.0883

Unknown

ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT5G14060

Predicted

Phenotypic Enhancement

FSW = 0.0338

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G14180

Predicted

Synthetic Rescue

FSW = 0.0864

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G16290

Predicted

Affinity Capture-Western

FSW = 0.0919

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.1222

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G09600

Predicted

Affinity Capture-MS

FSW = 0.0346

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G12130

Predicted

Synthetic Lethality

FSW = 0.0047

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G33090

Predicted

Affinity Capture-Western

FSW = 0.0539

Unknown

MATE EFFLUX FAMILY PROTEIN
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.0561

Unknown

MO25 FAMILY PROTEIN
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.0899

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G21460

Predicted

Synthetic Rescue

FSW = 0.0447

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.0605

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0654

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G02560

Predicted

Affinity Capture-MS

FSW = 0.0617

Unknown

HTA12 DNA BINDING
AT5G13480

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

FY PROTEIN BINDING
AT5G24840

Predicted

Synthetic Lethality

FSW = 0.0104

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G66360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1481

Unknown

RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.1699

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT3G48960

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0219

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454