Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23900 - ( 60S ribosomal protein L13 (RPL13D) )
74 Proteins interacs with AT5G23900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0310
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G19640 | Predictedsynthetic growth defect | FSW = 0.0093
| Class C:plasma membrane | ARA7 GTP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1130
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0118
| Class C:plasma membrane | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT5G57490 | PredictedAffinity Capture-MS | FSW = 0.0141
| Class C:plasma membrane | VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL |
AT3G22890 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0582
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1010
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0411
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0835
| Class C:plasma membrane | ATVAMP725 |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1536
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0392
| Class C:plasma membrane | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.0922
| Class C:plasma membrane | ZINC ION BINDING |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0787
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0110
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0159
| Class C:plasma membrane | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0315
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | UNKNOWN PROTEIN |
AT5G10350 | PredictedProtein-peptideSynthetic Rescue | FSW = 0.0694
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0879
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0872
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G29690 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.1786
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G10070 | PredictedSynthetic Rescue | FSW = 0.0329
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G48880 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0664
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT3G04460 | Predictedinterologs mapping | FSW = 0.0583
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | CHC1 |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G54350 | Predictedtwo hybrid | FSW = 0.0144
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT1G09060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1330
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.1088
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.0547
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G13650 | PredictedAffinity Capture-Western | FSW = 0.0900
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | ATPRB1 |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G07820 | PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G45280 | PredictedAffinity Capture-MS | FSW = 0.1892
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.0649
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G27350 | Predictedtwo hybrid | FSW = 0.0173
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G61330 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G25800 | Predictedtwo hybrid | FSW = 0.0456
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT1G11530 | Predictedsynthetic growth defect | FSW = 0.0873
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.0257
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.0647
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1481
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G32160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0373
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G33560 | PredictedReconstituted ComplexSynthetic RescueReconstituted Complextwo hybridSynthetic Rescue | FSW = 0.0360
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1600
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G54085 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK) |
AT3G59790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0879
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT3G62760 | PredictedPhenotypic EnhancementAffinity Capture-WesternPhenotypic EnhancementSynthetic LethalityReconstituted Complexinterologs mappingSynthetic Rescue | FSW = 0.0443
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.0883
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.0338
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G14180 | PredictedSynthetic Rescue | FSW = 0.0864
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G16290 | PredictedAffinity Capture-Western | FSW = 0.0919
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1222
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G09600 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0047
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G33090 | PredictedAffinity Capture-Western | FSW = 0.0539
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | MO25 FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0899
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G21460 | PredictedSynthetic Rescue | FSW = 0.0447
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.0605
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0654
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0617
| Unknown | HTA12 DNA BINDING |
AT5G13480 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | FY PROTEIN BINDING |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G66360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1481
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT3G48960 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0219
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454