Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24270 - ( SOS3 (SALT OVERLY SENSITIVE 3) calcium ion binding / calcium-dependent protein serine/threonine phosphatase )
25 Proteins interacs with AT5G24270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26570 | Experimental | FSW = 0.4333
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT5G01820 | Experimental | FSW = 0.1406
| Class D:cytosol (p = 0.67) | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G26300 | Experimentalinteraction detection method | FSW = 0.0106
| Class D:cytosol (p = 0.67) | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT3G48430 | Experimentalfilter binding | FSW = 0.0381
| Unknown | REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G01420 | Experimental | FSW = 0.5291
| Class D:cytosol (p = 0.67) | CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING |
AT5G10930 | Experimentaltwo hybrid | FSW = 0.0889
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30960 | Experimentaltwo hybridtwo hybrid | FSW = 0.1067
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimentaltwo hybridtwo hybridReconstituted Complextwo hybridpull downpull downfilter bindingprotein kinase assayfar western blottingtwo hybridReconstituted Complexin vitro | FSW = 0.0806
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT5G58380 | Experimentaltwo hybrid | FSW = 0.0540
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01810 | Experimentaltwo hybrid | FSW = 0.1379
| Unknown | CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) KINASE/ PROTEIN KINASE |
AT2G30360 | Experimental | FSW = 0.1466
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT3G17510 | Experimentaltwo hybrid | FSW = 0.1789
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT3G23000 | Experimentaltwo hybrid | FSW = 0.1792
| Unknown | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G18700 | Experimental | FSW = 0.2133
| Unknown | CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G07070 | Experimentaltwo hybrid | FSW = 0.1290
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01140 | Experimentaltwo hybrid | FSW = 0.1067
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G43350 | Experimentaltwo hybrid | FSW = 0.0306
| Unknown | ATGPX3 (GLUTATHIONE PEROXIDASE 3) GLUTATHIONE PEROXIDASE |
AT3G11250 | Predictedtwo hybridtwo hybrid | FSW = 0.0476
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0C) |
AT5G50850 | Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G64070 | Predictedin vivoin vivoin vivoin vitroin vitroin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.0683
| Unknown | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) 1-PHOSPHATIDYLINOSITOL 4-KINASE |
AT4G17615 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5105
| Unknown | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT4G04870 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT3G08690 | Predictedtwo hybrid | FSW = 0.0355
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G56150 | Predictedtwo hybrid | FSW = 0.0264
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT1G64480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0207
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454