Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24360 - ( IRE1-1 (INOSITOL REQUIRING 1-1) ATP binding / endoribonuclease producing 5-phosphomonoesters / kinase/ protein kinase/ protein serine/threonine kinase )

11 Proteins interacs with AT5G24360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42020

Predicted

Reconstituted Complex

FSW = 0.0889

Class C:

nucleus

endoplasmic reticulum

 BIP2 ATP BINDING
AT5G28540

Predicted

in vitro

FSW = 0.1381

Class C:

nucleus

 BIP1 ATP BINDING
AT3G10330

Predicted

interaction prediction

FSW = 0.0159

Class C:

nucleus

 TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT3G54610

Predicted

interologs mapping

interaction prediction

FSW = 0.0102

Class C:

nucleus

 GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G50670

Predicted

interaction prediction

FSW = 0.0083

Class C:

nucleus

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G76490

Predicted

interaction prediction

FSW = 0.0443

Class C:

endoplasmic reticulum

 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT5G56000

Predicted

in vivo

FSW = 0.0216

Unknown

 HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT3G58730

Predicted

two hybrid

FSW = 0.0269

Unknown

 VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT2G29900

Predicted

in vivo

in vitro

FSW = 0.0269

Unknown

 PRESENILIN FAMILY PROTEIN
AT5G38600

Predicted

two hybrid

FSW = 0.0462

Unknown

 PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN / ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT5G38630

Predicted

two hybrid

FSW = 0.0482

Unknown

 ACYB-1 CARBON-MONOXIDE OXYGENASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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