Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24400 - ( emb2024 (embryo defective 2024) 6-phosphogluconolactonase/ catalytic )
66 Proteins interacs with AT5G24400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.4319
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3689
| Class C:plastid | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.0043
| Class C:plastid | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G15210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2164
| Class C:plastid | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2498
| Class C:plastid | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Class C:plastid | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2183
| Class C:plastid | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2997
| Class C:plastid | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.3133
| Class C:plastid | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.1869
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.3160
| Class C:peroxisome | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.2227
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.2492
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.3227
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2612
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.2905
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4402
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2400
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3830
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.2769
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.2154
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.3722
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G23460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3315
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.2273
| Unknown | HISTONE H2B PUTATIVE |
AT1G34065 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2874
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.4334
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.2482
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.2539
| Unknown | BINDING |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.1236
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G08335 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3009
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0653
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT5G41520 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10B) |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3886
| Unknown | PSF2 |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2281
| Unknown | UNKNOWN PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.3126
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3634
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4069
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1985
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G14310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1736
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.1354
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3831
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G66240 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.4232
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.3659
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4096
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0983
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2344
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G46710 | PredictedReconstituted Complex | FSW = 0.0129
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.2467
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2904
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.2382
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.3672
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.3728
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4088
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.3595
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3631
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4669
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3115
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2189
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454