Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24670 - ( catalytic/ hydrolase/ zinc ion binding )
42 Proteins interacs with AT5G24670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G17730 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0025
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G24770 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT1G07890 | PredictedAffinity Capture-MS | FSW = 0.0336
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT5G53890 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G20360 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | BINDING / CATALYTIC/ COENZYME BINDING |
AT3G56760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0237
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1312
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0563
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT5G35530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0076
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0182
| Unknown | ATPRB1 |
AT1G34420 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | RNA HELICASE PUTATIVE |
AT5G25060 | Predictedtwo hybrid | FSW = 0.0237
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.0747
| Unknown | UNKNOWN PROTEIN |
AT2G46230 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
AT3G04710 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0764
| Unknown | ATATG18A |
AT4G04740 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0365
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2046
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G20060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0688
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.1107
| Unknown | HISTONE H4 |
AT4G09200 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT4G11410 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G05420 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G24840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0502
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G61050 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | HISTONE DEACETYLASE-RELATED / HD-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454