Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25060 - ( RNA recognition motif (RRM)-containing protein )
12 Proteins interacs with AT5G25060| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G11210
   | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0821
| Unknown | ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT3G25980
| Predictedtwo hybrid | FSW = 0.0073
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
| AT5G03340
| PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT5G08420
| Predictedtwo hybrid | FSW = 0.0111
| Unknown | RNA BINDING |
| AT5G13780
| Predictedtwo hybrid | FSW = 0.0060
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G19000
| Predictedtwo hybrid | FSW = 0.0344
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
| AT5G24670
| Predictedtwo hybrid | FSW = 0.0237
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
| AT5G47650
| Predictedtwo hybrid | FSW = 0.0314
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
| AT4G34110
| PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT5G10220
| PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
| AT5G57320
| PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | VILLIN PUTATIVE |
| AT5G57610
| Predictedin vivoin vitro | FSW = 0.0593
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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