Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25150 - ( TAF5 (TBP-ASSOCIATED FACTOR 5) nucleotide binding / transcription regulator )
78 Proteins interacs with AT5G25150| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G17440
   | Experimentaltwo hybrid | FSW = 0.2721
| Class A:nucleusClass D:nucleus (p = 0.78) | EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT4G16143
| Experimental | FSW = 0.0165
| Class A:nucleusClass D:nucleus (p = 0.78) | IMPA-2 (IMPORTIN ALPHA ISOFORM 2) BINDING / PROTEIN TRANSPORTER |
| AT4G31720
| Experimentaltwo hybrid | FSW = 0.2055
| Class A:nucleusClass D:nucleus (p = 0.78) | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT1G02680
| Experimental | FSW = 0.1532
| Class A:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT5G58470
| Experimentaltwo hybrid | FSW = 0.0737
| Class B:plastidnucleusClass D:nucleus (p = 0.78) | TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT4G35600
| Experimental | FSW = 0.0274
| Class B:plasma membranenucleus | CONNEXIN 32 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G32750
| Experimentaltwo hybrid | FSW = 0.2694
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
| AT3G10070
| Experimentaltwo hybrid | FSW = 0.3075
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT2G18000
| Experimentaltwo hybrid | FSW = 0.1155
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
| AT5G45600
| Experimentaltwo hybrid | FSW = 0.0989
| Unknown | GAS41 PROTEIN BINDING |
| AT1G27720
| Experimentaltwo hybrid | FSW = 0.1665
| Unknown | TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR |
| AT5G43130
| Experimentaltwo hybrid | FSW = 0.2992
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
| AT1G71800
| Experimentalbiochemical | FSW = 0.0127
| Unknown | CLEAVAGE STIMULATION FACTOR PUTATIVE |
| AT4G34340
| Experimentaltwo hybrid | FSW = 0.3191
| Unknown | TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING |
| AT1G54140
| Experimentaltwo hybrid | FSW = 0.2232
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT5G28540
| PredictedGene fusion method | FSW = 0.0152
| Class C:nucleus | BIP1 ATP BINDING |
| AT3G20060
| Predictedinterologs mapping | FSW = 0.0258
| Class C:nucleus | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
| AT1G21700
| PredictedPhenotypic Enhancement | FSW = 0.0437
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT3G54610
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.1633
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT3G13445
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westernin vivoin vitroReconstituted Complexinteraction prediction | FSW = 0.0799
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT4G24440
| PredictedReconstituted Complex | FSW = 0.0546
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
| AT1G55520
| Predictedin vivoin vitroAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1151
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT2G13370
| PredictedAffinity Capture-MS | FSW = 0.1172
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT2G36740
| PredictedPhenotypic Enhancement | FSW = 0.0799
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G38560
| PredictedPhenotypic Enhancement | FSW = 0.0536
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
| AT1G43700
| Predictedtwo hybrid | FSW = 0.0099
| Class C:nucleus | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT3G22110
| PredictedPhenotypic Enhancement | FSW = 0.0152
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G13710
| PredictedPhenotypic Enhancement | FSW = 0.0438
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
| AT3G11630
| PredictedPhenotypic Enhancement | FSW = 0.0042
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G05420
| PredictedGene fusion method | FSW = 0.0428
| Unknown | ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING |
| AT4G23180
| PredictedGene fusion method | FSW = 0.0262
| Unknown | CRK10 (CYSTEINE-RICH RLK10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G67200
| PredictedGene fusion method | FSW = 0.1412
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
| AT5G19990
| PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0193
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT1G24510
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0322
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
| AT5G20890
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0271
| Unknown | CHAPERONIN PUTATIVE |
| AT1G75510
| Predictedin vitro | FSW = 0.0640
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
| AT3G17465
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0071
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G03916 | Predictedinteraction prediction | FSW = 0.0494
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G16420
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationinterologs mapping | FSW = 0.0669
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT3G16857
| PredictedGene fusion method | FSW = 0.0132
| Unknown | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT5G19910
| PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | SOH1 FAMILY PROTEIN |
| AT2G22310
| PredictedPhenotypic Enhancement | FSW = 0.0249
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
| AT1G73100
| PredictedGene fusion method | FSW = 0.0120
| Unknown | SUVH3 (SU(VAR)3-9 HOMOLOG 3) HISTONE METHYLTRANSFERASE |
| AT5G51660
| Predictedin vitro | FSW = 0.0837
| Unknown | CPSF160 NUCLEIC ACID BINDING |
| AT3G20050
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0278
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0041
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G04950
| Predictedtwo hybridtwo hybridCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerntwo hybridAffinity Capture-MSin vivoin vitroReconstituted ComplexColocalizationinterologs mappinginteraction prediction | FSW = 0.2799
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT1G20000
| Predictedin vivoin vitro | FSW = 0.0916
| Unknown | TAF11B (TBP-ASSOCIATED FACTOR 11B) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT1G54360
| Predictedin vivoin vitroReconstituted Complex | FSW = 0.0643
| Unknown | TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT3G19040
| Predictedin vivoin vitro | FSW = 0.1315
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
| AT3G52270 | Predictedin vitro | FSW = 0.0399
| Unknown | ATP BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT4G20280
| Predictedin vivoin vitro | FSW = 0.0601
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT5G60340 | Predictedin vivoin vitro | FSW = 0.0171
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
| AT1G30580
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | GTP BINDING |
| AT1G55300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationCo-purification | FSW = 0.1321
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G73960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2099
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
| AT4G04210
| PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | PUX4 PROTEIN BINDING |
| AT4G21800
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0029
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
| AT4G36080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1597
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
| AT5G10790
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1745
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
| AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.0401
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT1G20610
| PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G51710
| PredictedPhenotypic Enhancement | FSW = 0.0423
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT3G18860
| PredictedPhenotypic Enhancement | FSW = 0.0982
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G18230
| PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1500
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
| AT5G42000
| PredictedPhenotypic Enhancement | FSW = 0.0161
| Unknown | ORMDL FAMILY PROTEIN |
| AT5G26360
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0253
| Unknown | CHAPERONIN PUTATIVE |
| AT5G41700
| PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G78770
| Predictedinterologs mapping | FSW = 0.0158
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
| AT2G10440
| Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.2455
| Unknown | UNKNOWN PROTEIN |
| AT3G07740
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1266
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G17930
| PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1633
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT4G38900
| Predictedinteraction prediction | FSW = 0.0366
| Unknown | BZIP PROTEIN |
| AT1G60500
| PredictedGene fusion method | FSW = 0.0120
| Unknown | DYNAMIN FAMILY PROTEIN |
| AT4G29050
| PredictedGene fusion method | FSW = 0.0419
| Unknown | LECTIN PROTEIN KINASE FAMILY PROTEIN |
| AT3G45440
| PredictedGene fusion method | FSW = 0.0424
| Unknown | LECTIN PROTEIN KINASE FAMILY PROTEIN |
| AT5G43020
| PredictedGene fusion method | FSW = 0.0857
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
| AT4G02420
| PredictedGene fusion method | FSW = 0.0632
| Unknown | LECTIN PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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