Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25260 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN plasma membrane EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s Band 7 protein (InterProIPR001107) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G252501) Has 4214 Blast hits to 3442 proteins in 652 species Archae - 14 Bacteria - 1365 Metazoa - 1204 Fungi - 198 Plants - 130 Viruses - 8 Other Eukaryotes - 1295 (source NCBI BLink) )

3 Proteins interacs with AT5G25260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G25250

Predicted

Phylogenetic profile method

FSW = 0.1469

Class C:

vacuole

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S BAND 7 PROTEIN (INTERPROIPR001107) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G252601) HAS 4072 BLAST HITS TO 3210 PROTEINS IN 656 SPECIES ARCHAE - 10 BACTERIA - 1411 METAZOA - 994 FUNGI - 195 PLANTS - 102 VIRUSES - 10 OTHER EUKARYOTES - 1350 (SOURCE NCBI BLINK)
AT5G64870

Predicted

Phylogenetic profile method

FSW = 0.1569

Class C:

vacuole

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BAND 7 PROTEIN (INTERPROIPR001107) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G252501) HAS 3110 BLAST HITS TO 2534 PROTEINS IN 575 SPECIES ARCHAE - 10 BACTERIA - 1084 METAZOA - 749 FUNGI - 138 PLANTS - 89 VIRUSES - 0 OTHER EUKARYOTES - 1040 (SOURCE NCBI BLINK)
AT5G64550

Predicted

two hybrid

FSW = 0.0952

Unknown

LORICRIN-RELATED

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454