Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25520 - ( transcription elongation factor-related )
19 Proteins interacs with AT5G25520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G19640 | PredictedSynthetic Rescue | FSW = 0.0182
| Unknown | ARA7 GTP BINDING |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G20920 | Predictedsynthetic growth defect | FSW = 0.2408
| Unknown | TRANSLOCATION PROTEIN-RELATED |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G26340 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purification | FSW = 0.0703
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2471
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT1G18040 | Predictedtwo hybrid | FSW = 0.0102
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0972
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT2G25100 | PredictedSynthetic Lethality | FSW = 0.0580
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT3G19450 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.3156
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0227
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G52210 | PredictedSynthetic Lethality | FSW = 0.0705
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G57190 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridsynthetic growth defectCo-purificationinterologs mapping | FSW = 0.1829
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454