Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25530 - ( DNAJ heat shock protein putative )

16 Proteins interacs with AT5G25530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02500

Predicted

Affinity Capture-MS

FSW = 0.0622

Unknown

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G12580

Predicted

Affinity Capture-MS

FSW = 0.0579

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT4G34460

Predicted

Gene fusion method

FSW = 0.0112

Unknown

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G02450

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1263

Unknown

GLYCINE-RICH PROTEIN
AT1G79930

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1118

Unknown

HSP91 ATP BINDING
AT5G03720

Predicted

Affinity Capture-MS

in vitro

FSW = 0.1500

Unknown

AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR
AT1G67970

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1894

Unknown

AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT3G07370

Predicted

Affinity Capture-MS

in vitro

in vivo

two hybrid

FSW = 0.0667

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT4G30480

Predicted

in vitro

FSW = 0.0621

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G01390

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2149

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G10350

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1796

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G08910

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3303

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G47940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2438

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT4G28480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4482

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G59725

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4482

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT2G20560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3039

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454