Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25760 - ( PEX4 (PEROXIN4) protein binding / ubiquitin-protein ligase )
27 Proteins interacs with AT5G25760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G21865 | Experimentaltwo hybrid | FSW = 0.1333
| Unknown | PEX22 (PEROXIN 22) PROTEIN BINDING |
AT1G36340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6401
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT4G37190 | Predictedtwo hybridinteraction prediction | FSW = 0.0889
| Unknown | INVOLVED IN PROTEIN POLYMERIZATION LOCATED IN CYTOSOL PLASMA MEMBRANE EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BETA TUBULIN AUTOREGULATION BINDING SITE (INTERPROIPR013838) TUBULIN/FTSZ GTPASE (INTERPROIPR003008) HAS 251 BLAST HITS TO 250 PROTEINS IN 111 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 89 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK) |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0332
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G16890 | PredictedPhylogenetic profile method | FSW = 0.4757
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G64230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4737
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT2G26350 | Predictedtwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.1684
| Unknown | PEX10 PROTEIN BINDING / ZINC ION BINDING |
AT3G13550 | PredictedPhylogenetic profile method | FSW = 0.3945
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0473
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0672
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0333
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G62540 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6552
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT5G42990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6266
| Unknown | UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2451
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G56150 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4877
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G08690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6024
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT3G08700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6145
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT2G16740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1617
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5207
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT3G55380 | PredictedPhylogenetic profile method | FSW = 0.4025
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | PredictedPhylogenetic profile method | FSW = 0.1807
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.4209
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT1G14400 | PredictedPhylogenetic profile method | FSW = 0.2250
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT2G32790 | PredictedPhylogenetic profile method | FSW = 0.3871
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G78870 | PredictedPhylogenetic profile method | FSW = 0.3834
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G46460 | PredictedPhylogenetic profile method | FSW = 0.4563
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G57870 | PredictedPhylogenetic profile method | FSW = 0.0889
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454