Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G25760 - ( PEX4 (PEROXIN4) protein binding / ubiquitin-protein ligase )

27 Proteins interacs with AT5G25760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G21865

Experimental

two hybrid

FSW = 0.1333

Unknown

PEX22 (PEROXIN 22) PROTEIN BINDING
AT1G36340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6401

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT4G37190

Predicted

two hybrid

interaction prediction

FSW = 0.0889

Unknown

INVOLVED IN PROTEIN POLYMERIZATION LOCATED IN CYTOSOL PLASMA MEMBRANE EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BETA TUBULIN AUTOREGULATION BINDING SITE (INTERPROIPR013838) TUBULIN/FTSZ GTPASE (INTERPROIPR003008) HAS 251 BLAST HITS TO 250 PROTEINS IN 111 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 89 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK)
AT1G05570

Predicted

interaction prediction

FSW = 0.0332

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G16890

Predicted

Phylogenetic profile method

FSW = 0.4757

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G64230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4737

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT2G26350

Predicted

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1684

Unknown

PEX10 PROTEIN BINDING / ZINC ION BINDING
AT3G13550

Predicted

Phylogenetic profile method

FSW = 0.3945

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0473

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT2G23420

Predicted

synthetic growth defect

FSW = 0.0672

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0333

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G62540

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6552

Unknown

UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT5G42990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6266

Unknown

UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2451

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4877

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT3G08690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6024

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6145

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1617

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.5207

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT3G55380

Predicted

Phylogenetic profile method

FSW = 0.4025

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT2G02760

Predicted

Phylogenetic profile method

FSW = 0.1807

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT4G27960

Predicted

Phylogenetic profile method

FSW = 0.4209

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT1G14400

Predicted

Phylogenetic profile method

FSW = 0.2250

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G32790

Predicted

Phylogenetic profile method

FSW = 0.3871

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G78870

Predicted

Phylogenetic profile method

FSW = 0.3834

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G46460

Predicted

Phylogenetic profile method

FSW = 0.4563

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT3G57870

Predicted

Phylogenetic profile method

FSW = 0.0889

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454