Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G25800 - ( exonuclease family protein )
32 Proteins interacs with AT5G25800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | Predictedtwo hybridtwo hybrid | FSW = 0.0118
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G10630 | Predictedtwo hybrid | FSW = 0.0480
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G22890 | Predictedtwo hybridtwo hybrid | FSW = 0.0141
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G43780 | Predictedtwo hybrid | FSW = 0.0527
| Unknown | APS4 SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0320
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT5G23900 | Predictedtwo hybrid | FSW = 0.0456
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT5G56290 | Predictedtwo hybridtwo hybrid | FSW = 0.0079
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G57015 | Predictedbiochemical | FSW = 0.0102
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0543
| Unknown | CHC1 |
AT5G35910 | Predictedinterologs mapping | FSW = 0.0115
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT2G37990 | PredictedSynthetic Lethality | FSW = 0.0091
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT5G35530 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0208
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT1G79250 | Predictedbiochemical | FSW = 0.0269
| Unknown | AGC17 (AGC KINASE 17) KINASE |
AT3G02560 | Predictedtwo hybridtwo hybrid | FSW = 0.0313
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT3G02220 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0239
| Unknown | UNKNOWN PROTEIN |
AT5G14670 | Predictedtwo hybrid | FSW = 0.0384
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G67420 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | PEPTIDASE |
AT3G13235 | Predictedtwo hybridtwo hybrid | FSW = 0.0286
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0711
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G10330 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | GLYCINE-RICH PROTEIN |
AT4G38440 | Predictedtwo hybrid | FSW = 0.0653
| Unknown | LOCATED IN CHLOROPLAST EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA POLYMERASE II-ASSOCIATED PROTEIN 1 C-TERMINAL (INTERPROIPR013929) RNA POLYMERASE II-ASSOCIATED PROTEIN 1 N-TERMINAL (INTERPROIPR013930) HAS 210 BLAST HITS TO 166 PROTEINS IN 68 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 135 FUNGI - 41 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK) |
AT5G06150 | Predictedtwo hybridtwo hybrid | FSW = 0.0039
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G13680 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0164
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G17380 | Predictedtwo hybridtwo hybrid | FSW = 0.0508
| Unknown | PYRUVATE DECARBOXYLASE FAMILY PROTEIN |
AT5G41990 | Predictedtwo hybridtwo hybrid | FSW = 0.0256
| Unknown | WNK8 (WITH NO LYSINE (K) KINASE 8) KINASE/ PROTEIN KINASE |
AT5G55560 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G26970 | PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT2G32850 | Predictedbiochemical | FSW = 0.0077
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G46960 | Predictedtwo hybrid | FSW = 0.0416
| Unknown | CYP709B1 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G49640 | Predictedtwo hybridinteraction prediction | FSW = 0.0653
| Unknown | FAD BINDING / CATALYTIC/ TRNA DIHYDROURIDINE SYNTHASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454