Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26110 - ( ATP binding / catalytic/ protein kinase )
37 Proteins interacs with AT5G26110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G04910 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0198
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G11870 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0078
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G10450 | Predictedinterologs mapping | FSW = 0.0211
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90D) |
AT2G20580 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0584
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0444
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19330 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G48545 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT3G09360 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G26660 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | SPX2 (SPX DOMAIN GENE 2) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G35670 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT1G10490 | Predictedtwo hybridCo-expression | FSW = 0.0039
| Unknown | UNKNOWN PROTEIN |
AT5G58290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0992
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G16350 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0075
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G29150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0324
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT2G15790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0288
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G03110 | Predictedtwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0113
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G12670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0415
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT4G04950 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G10310 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER |
AT4G14160 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0214
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G21800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G22720 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.0500
| Unknown | GLYCOPROTEASE M22 FAMILY PROTEIN |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G09900 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0597
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23420 | PredictedDosage Growth Defect | FSW = 0.0167
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.0102
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT5G46180 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
AT1G30820 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G05520 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT5G13060 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454