Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26600 - ( catalytic/ pyridoxal phosphate binding )

9 Proteins interacs with AT5G26600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G34460

Predicted

two hybrid

FSW = 0.0141

Unknown

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G44500

Predicted

two hybrid

FSW = 0.0104

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G47770

Predicted

two hybrid

FSW = 0.0618

Unknown

FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G02570

Predicted

two hybrid

FSW = 0.0113

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT4G19003

Predicted

two hybrid

FSW = 0.0262

Unknown

VPS25
AT5G06110

Predicted

two hybrid

FSW = 0.1641

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT5G42620

Predicted

two hybrid

FSW = 0.0833

Unknown

METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT5G01800

Predicted

Affinity Capture-MS

in vivo

FSW = 0.1131

Unknown

SAPOSIN B DOMAIN-CONTAINING PROTEIN
AT3G62130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0482

Unknown

EPIMERASE-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454