Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26667 - ( PYR6 cytidylate kinase/ uridylate kinase )

9 Proteins interacs with AT5G26667
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G50370

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1955

Unknown

ADENYLATE KINASE PUTATIVE
AT5G63400

Predicted

interologs mapping

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.0447

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G64190

Predicted

Synthetic Lethality

FSW = 0.0164

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G65040

Predicted

Affinity Capture-MS

FSW = 0.0399

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G60180

Predicted

Phylogenetic profile method

FSW = 0.1875

Unknown

URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT5G42400

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

SDG25 (SET DOMAIN PROTEIN 25)
AT1G26140

Predicted

interologs mapping

FSW = 0.0321

Unknown

UNKNOWN PROTEIN
AT5G38290

Predicted

Affinity Capture-Western

FSW = 0.1065

Unknown

PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT5G59440

Predicted

interologs mapping

FSW = 0.0973

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454