Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26751 - ( ATSK11 protein kinase/ protein serine/threonine kinase )
38 Proteins interacs with AT5G26751Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01370 | PredictedPhylogenetic profile method | FSW = 0.1605
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT4G33650 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0145
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G06270 | PredictedAffinity Capture-Western | FSW = 0.0504
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G09840 | PredictedPhylogenetic profile method | FSW = 0.3401
| Unknown | ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.5069
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT5G49460 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) ATP CITRATE SYNTHASE |
AT4G18710 | PredictedPhylogenetic profile method | FSW = 0.5790
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT5G19330 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0252
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT4G34430 | PredictedPhenotypic Suppression | FSW = 0.0351
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G23620 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G08730 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0037
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12980 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G17900 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | SDG37 ZINC ION BINDING |
AT3G15610 | PredictedAffinity Capture-MS | FSW = 0.0434
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G33980 | Predictedtwo hybrid | FSW = 0.0244
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT3G04240 | Predictedin vitroin vivo | FSW = 0.0186
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G59160 | PredictedAffinity Capture-Western | FSW = 0.0168
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G46190 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.6307
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14640 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5818
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G46070 | PredictedPhylogenetic profile method | FSW = 0.1812
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT4G00720 | PredictedPhylogenetic profile method | FSW = 0.1469
| Unknown | ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G18170 | PredictedPhylogenetic profile method | FSW = 0.4541
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT1G57870 | PredictedPhylogenetic profile method | FSW = 0.3486
| Unknown | ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G07880 | PredictedPhylogenetic profile method | FSW = 0.2790
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT4G36450 | PredictedPhylogenetic profile method | FSW = 0.5319
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT3G61160 | PredictedPhylogenetic profile method | FSW = 0.3075
| Unknown | SHAGGY-RELATED PROTEIN KINASE BETA / ASK-BETA (ASK2) |
AT3G59790 | PredictedPhylogenetic profile method | FSW = 0.2208
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G10210 | PredictedPhylogenetic profile method | FSW = 0.1332
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G30980 | PredictedPhylogenetic profile method | FSW = 0.4692
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G59580 | PredictedPhylogenetic profile method | FSW = 0.1966
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G43790 | PredictedPhylogenetic profile method | FSW = 0.1812
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G45640 | PredictedPhylogenetic profile method | FSW = 0.4330
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G14580 | PredictedGene fusion method | FSW = 0.0824
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G23340 | PredictedGene fusion method | FSW = 0.0790
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (FBL4) (TAIRAT4G154751) HAS 9095 BLAST HITS TO 3545 PROTEINS IN 210 SPECIES ARCHAE - 0 BACTERIA - 454 METAZOA - 4575 FUNGI - 774 PLANTS - 2118 VIRUSES - 15 OTHER EUKARYOTES - 1159 (SOURCE NCBI BLINK) |
AT1G11650 | PredictedGene fusion method | FSW = 0.0696
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454