Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26780 - ( SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding )

19 Proteins interacs with AT5G26780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G37930

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6068

Class C:

mitochondrion

SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT3G04520

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1204

Unknown

THA2 (THREONINE ALDOLASE 2) THREONINE ALDOLASE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G32520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2896

Unknown

SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT4G29810

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT4G13930

Predicted

Phylogenetic profile method

FSW = 0.2439

Unknown

SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT1G50480

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0681

Unknown

THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE
AT5G58850

Predicted

two hybrid

FSW = 0.0368

Unknown

MYB119 (MYB DOMAIN PROTEIN 119) DNA BINDING / TRANSCRIPTION FACTOR
AT5G48870

Predicted

two hybrid

FSW = 0.0295

Unknown

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT5G05980

Predicted

Synthetic Lethality

FSW = 0.1957

Unknown

ATDFB (A THALIANA DHFS-FPGS HOMOLOG B) TETRAHYDROFOLYLPOLYGLUTAMATE SYNTHASE
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.0180

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G64550

Predicted

Affinity Capture-MS

FSW = 0.0533

Unknown

ATGCN3 TRANSPORTER
AT3G24090

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT1G77470

Predicted

Affinity Capture-MS

FSW = 0.0474

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT2G32600

Predicted

Affinity Capture-MS

FSW = 0.0257

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G42190

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G36370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2518

Unknown

SHM7 (SERINE HYDROXYMETHYLTRANSFERASE 7) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT4G13890

Predicted

Phylogenetic profile method

FSW = 0.2439

Unknown

EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454