Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26830 - ( threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) )
16 Proteins interacs with AT5G26830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48100 | Experimentaltwo hybrid | FSW = 0.0324
| Unknown | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.0327
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT2G04842 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0301
| Class C:mitochondrion | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
AT5G42310 | PredictedGene fusion method | FSW = 0.0766
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G35910 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT3G02760 | Predictedin vivoin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0529
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ HISTIDINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G25230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0168
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0386
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G14500 | PredictedAffinity Capture-MS | FSW = 0.1500
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G52580 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RAB GTPASE ACTIVATOR |
AT5G52590 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | RAB GTPASE ACTIVATOR |
AT3G01590 | PredictedAffinity Capture-MS | FSW = 0.0900
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT1G54440 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT1G01960 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT5G27470 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0602
| Unknown | SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454