Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27080 - ( WD-40 repeat family protein )
20 Proteins interacs with AT5G27080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02660 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
AT4G32830 | Predictedin vitro | FSW = 0.0600
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25980 | PredictedAffinity Capture-Westernin vitroin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vivoin vitroAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-crystal StructureReconstituted Complex | FSW = 0.0581
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G28820 | Predictedtwo hybrid | FSW = 0.0938
| Unknown | ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT5G13840 | PredictedPhenotypic Suppression | FSW = 0.1301
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT1G06590 | PredictedReconstituted Complex | FSW = 0.3531
| Unknown | UNKNOWN PROTEIN |
AT1G78770 | Predictedin vitroin vivoin vivoin vitroReconstituted Complex | FSW = 0.0578
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G39090 | PredictedReconstituted Complex | FSW = 0.4118
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G16320 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.4032
| Unknown | CDC27A BINDING |
AT4G10330 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | GLYCINE-RICH PROTEIN |
AT5G11300 | PredictedAffinity Capture-Westerntwo hybridin vivo | FSW = 0.0162
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16590 | PredictedReconstituted Complex | FSW = 0.0625
| Unknown | REV7 DNA BINDING |
AT2G20635 | Predictedtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vitrotwo hybrid | FSW = 0.0711
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26900 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2518
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G22910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3269
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT4G11920 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1955
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G33260 | PredictedPhylogenetic profile method | FSW = 0.3795
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT4G33270 | PredictedPhylogenetic profile method | FSW = 0.4476
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT5G44160 | PredictedGene fusion method | FSW = 0.2143
| Unknown | NUC (NUTCRACKER) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G73400 | PredictedGene fusion method | FSW = 0.0803
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454