Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27640 - ( TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) nucleic acid binding / translation initiation factor )
56 Proteins interacs with AT5G27640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G57290 | Experimentalco-fractionationCo-fractionation | FSW = 0.0988
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT1G02090 | Experimentalco-fractionationCo-fractionation | FSW = 0.0733
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT1G10840 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.1039
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT3G56150 | ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.0729
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT1G51980 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE |
AT5G24780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5147
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G25780 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0346
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4073
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4355
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4343
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G33340 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G60390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0878
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G75840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4233
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5025
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2544
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5197
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G44150 | PredictedAffinity Capture-MS | FSW = 0.0678
| Unknown | UNKNOWN PROTEIN |
AT4G11420 | Predictedin vitroin vivoin vivoin vitroCo-purification | FSW = 0.0297
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT5G48880 | Predictedbiochemical | FSW = 0.0087
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0845
| Unknown | HISTONE H2B PUTATIVE |
AT4G22380 | Predictedtwo hybridtwo hybrid | FSW = 0.0162
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3916
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5351
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3457
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2670
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3707
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G26830 | Predictedtwo hybridtwo hybrid | FSW = 0.0097
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0082
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3264
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5900
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G01770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5789
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4514
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4825
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4926
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3550
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1945
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.4978
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4939
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5259
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3960
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3866
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4424
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1945
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4504
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4730
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G27340 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.3312
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4645
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.3429
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.3375
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2388
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454