Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27680 - ( RECQSIM (Arabidopsis RecQ helicase sim) ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )

7 Proteins interacs with AT5G27680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16970

Predicted

in vivo

in vitro

FSW = 0.0749

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT1G48050

Predicted

in vivo

in vivo

in vitro

in vitro

FSW = 0.1341

Unknown

KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G29570

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-Western

FSW = 0.0694

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G60620

Predicted

in vivo

FSW = 0.0231

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G26680

Predicted

in vivo

in vivo

in vitro

in vitro

Reconstituted Complex

FSW = 0.0324

Unknown

ENDONUCLEASE PUTATIVE
AT1G10930

Predicted

in vivo

in vitro

Affinity Capture-Western

Reconstituted Complex

Enriched domain pair

FSW = 0.0681

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G24290

Predicted

in vitro

FSW = 0.0515

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454