Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28020 - ( CYSD2 (CYSTEINE SYNTHASE D2) catalytic/ cysteine synthase/ pyridoxal phosphate binding )

9 Proteins interacs with AT5G28020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G56760

Experimental

Affinity Capture-MS

affinity technology

FSW = 0.2882

Class B:

plasma membrane

cytosol

Class D:

cytosol (p = 0.67)

ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE
AT4G14880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3294

Class C:

plasma membrane

OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT1G06530

Predicted

Gene fusion method

FSW = 0.1731

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT2G43750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3494

Unknown

OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE
AT3G61440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3407

Unknown

CYSC1 (CYSTEINE SYNTHASE C1) L-3-CYANOALANINE SYNTHASE/ CYSTEINE SYNTHASE
AT3G04940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4828

Unknown

CYSD1 (CYSTEINE SYNTHASE D1) CYSTEINE SYNTHASE
AT5G28030

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5649

Unknown

CYSTEINE SYNTHASE PUTATIVE / O-ACETYLSERINE (THIOL)-LYASE PUTATIVE / O-ACETYLSERINE SULFHYDRYLASE PUTATIVE
AT1G55880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0482

Unknown

PYRIDOXAL-5-PHOSPHATE-DEPENDENT ENZYME BETA FAMILY PROTEIN
AT1G63230

Predicted

Gene fusion method

FSW = 0.1988

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454