Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28060 - ( 40S ribosomal protein S24 (RPS24B) )
44 Proteins interacs with AT5G28060| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0759
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT4G27090
| PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3318
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
| AT2G47610
| PredictedPhenotypic Suppression | FSW = 0.0206
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G47520
| PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1818
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT5G09590
| PredictedSynthetic Lethality | FSW = 0.0488
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT3G08710
| PredictedPhenotypic Enhancement | FSW = 0.0851
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G62870
| PredictedSynthetic Lethality | FSW = 0.0438
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G55920
| PredictedPhenotypic Enhancement | FSW = 0.2760
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT5G51820
| PredictedSynthetic Lethality | FSW = 0.0512
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT5G56350
| Predictedtwo hybrid | FSW = 0.0167
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT5G02490
| PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
| AT5G22220
| Predictedtwo hybrid | FSW = 0.0062
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT2G27720
| PredictedPhenotypic Suppression | FSW = 0.0938
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2A) |
| AT1G53165
| PredictedPhenotypic Enhancement | FSW = 0.2010
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G15430
| PredictedPhenotypic Enhancement | FSW = 0.1460
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G29330
| PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1175
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
| AT4G33730
| PredictedPhenotypic Enhancement | FSW = 0.1793
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G57650
| Predictedtwo hybrid | FSW = 0.0625
| Unknown | LPAT2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
| AT3G52090
| Predictedtwo hybrid | FSW = 0.0344
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT4G15900
| Predictedtwo hybrid | FSW = 0.0842
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G32850
| Predictedtwo hybrid | FSW = 0.0448
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G18660
| Predictedtwo hybrid | FSW = 0.0250
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G19350
| Predictedtwo hybrid | FSW = 0.0189
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT5G58020
| Predictedtwo hybrid | FSW = 0.0454
| Unknown | UNKNOWN PROTEIN |
| AT1G07340
| PredictedPhenotypic Enhancement | FSW = 0.0533
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G49520
| PredictedPhenotypic Enhancement | FSW = 0.1546
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT1G76920
| PredictedPhenotypic Suppression | FSW = 0.2212
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
| AT2G01830
| PredictedPhenotypic Enhancement | FSW = 0.1110
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
| AT2G23070
| PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT2G24960
| PredictedPhenotypic Enhancement | FSW = 0.1342
| Unknown | UNKNOWN PROTEIN |
| AT3G05960
| PredictedPhenotypic Enhancement | FSW = 0.1134
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G24040
| PredictedPhenotypic Enhancement | FSW = 0.1684
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
| AT4G33950
| PredictedPhenotypic Enhancement | FSW = 0.1820
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
| AT1G20610
| PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G52500
| PredictedSynthetic Lethality | FSW = 0.0363
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
| AT1G61670
| PredictedPhenotypic Suppression | FSW = 0.3853
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
| AT2G27340
| PredictedPhenotypic Enhancement | FSW = 0.2239
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
| AT2G29190
| PredictedPhenotypic Enhancement | FSW = 0.3008
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
| AT2G48100
| PredictedSynthetic Lethality | FSW = 0.0299
| Unknown | EXONUCLEASE FAMILY PROTEIN |
| AT3G12690
| PredictedSynthetic Rescue | FSW = 0.0202
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT5G19300
| PredictedSynthetic Lethality | FSW = 0.1818
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT5G52200
| PredictedPhenotypic Enhancement | FSW = 0.1948
| Unknown | UNKNOWN PROTEIN |
| AT5G52210
| PredictedPhenotypic Enhancement | FSW = 0.0808
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
| AT5G57190
| PredictedPhenotypic Enhancement | FSW = 0.3429
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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