Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28290 - ( ATNEK3 (NIMA-RELATED KINASE3) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

11 Proteins interacs with AT5G28290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G44020

Predicted

two hybrid

FSW = 0.0529

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G04120

Predicted

two hybrid

FSW = 0.0245

Unknown

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G21630

Predicted

two hybrid

FSW = 0.0482

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G23930

Predicted

two hybrid

FSW = 0.0933

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT5G41770

Predicted

two hybrid

FSW = 0.0141

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G54630

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0239

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT4G11330

Predicted

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0233

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G52200

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0179

Unknown

UNKNOWN PROTEIN
AT3G04810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1625

Unknown

ATNEK2 (NIMA-RELATED KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G54510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1861

Unknown

ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G63280

Predicted

Phylogenetic profile method

FSW = 0.1600

Unknown

ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454