Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28350 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s Protein of unknown function DUF1339 (InterProIPR009771) WD40 repeat (InterProIPR001680) WD40/YVTN repeat-like (InterProIPR015943) Quinoprotein amine dehydrogenase beta chain-like (InterProIPR011044) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT3G614801) Has 271 Blast hits to 226 proteins in 106 species Archae - 0 Bacteria - 9 Metazoa - 133 Fungi - 64 Plants - 30 Viruses - 0 Other Eukaryotes - 35 (source NCBI BLink) )

4 Proteins interacs with AT5G28350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G57860

Predicted

two hybrid

FSW = 0.0443

Unknown

 60S RIBOSOMAL PROTEIN L21
AT2G27970

Predicted

two hybrid

FSW = 0.0108

Unknown

 CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G18570

Predicted

two hybrid

FSW = 0.1233

Unknown

 GTP1/OBG FAMILY PROTEIN
AT3G61480Predicted

Phylogenetic profile method

FSW = 0.1381

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN MALE GAMETOPHYTE CULTURED CELL POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF1339 (INTERPROIPR009771) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) QUINOPROTEIN AMINE DEHYDROGENASE BETA CHAIN-LIKE (INTERPROIPR011044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G283502) HAS 245 BLAST HITS TO 227 PROTEINS IN 108 SPECIES ARCHAE - 0 BACTERIA - 13 METAZOA - 104 FUNGI - 64 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 35 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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