Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28470 - ( transporter )

23 Proteins interacs with AT5G28470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0779

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G62870

Predicted

two hybrid

FSW = 0.0157

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0101

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.0922

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0727

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT2G44350

Predicted

Affinity Capture-MS

FSW = 0.0394

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT3G44610

Predicted

Affinity Capture-MS

FSW = 0.0866

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G45380

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT1G59830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0417

Unknown

PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G59950

Predicted

Affinity Capture-MS

FSW = 0.0616

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G31470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3273

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.1089

Unknown

CORNICHON FAMILY PROTEIN
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.1014

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.0661

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G04740

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G25510

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.1000

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT2G27340

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G59845

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G01390

Predicted

Phenotypic Suppression

FSW = 0.0431

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27080

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0618

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G69860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0664

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454