Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G28470 - ( transporter )
23 Proteins interacs with AT5G28470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0922
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0727
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0394
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0866
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT1G59830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0417
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G31470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3273
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.1089
| Unknown | CORNICHON FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1014
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G04740 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G27340 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT3G59845 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G01390 | PredictedPhenotypic Suppression | FSW = 0.0431
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0618
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G69860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0664
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454