Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G30495 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Fcf2 pre-rRNA processing (InterProIPR014810) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G547701) Has 218 Blast hits to 218 proteins in 114 species Archae - 0 Bacteria - 0 Metazoa - 88 Fungi - 76 Plants - 26 Viruses - 0 Other Eukaryotes - 28 (source NCBI BLink) )

9 Proteins interacs with AT5G30495
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G31490

Predicted

Affinity Capture-MS

FSW = 0.0482

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.0173

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G02570

Predicted

Reconstituted Complex

FSW = 0.0745

Unknown

HISTONE H2B PUTATIVE
AT5G54260

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G08535

Predicted

two hybrid

FSW = 0.0863

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT5G02560

Predicted

Reconstituted Complex

FSW = 0.0234

Unknown

HTA12 DNA BINDING
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.0399

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0062

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT1G54770

Predicted

Phylogenetic profile method

FSW = 0.1170

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G304952) HAS 216 BLAST HITS TO 216 PROTEINS IN 112 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 26 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454