Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G30510 - ( RPS1 (RIBOSOMAL PROTEIN S1) RNA binding / structural constituent of ribosome )
33 Proteins interacs with AT5G30510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33210
   | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0399
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
| AT2G36990
| Predictedpull down | FSW = 0.2036
| Class C:plastid | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
| AT3G63490
| Predictedpull down | FSW = 0.2898
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT2G33800
| Predictedpull down | FSW = 0.3492
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT2G04842
| Predictedpull down | FSW = 0.1125
| Class C:plastid | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
| AT4G30690
| Predictedpull down | FSW = 0.1385
| Class C:plastid | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
| AT3G18680
| Predictedpull down | FSW = 0.1487
| Class C:plastid | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
| AT5G15450
| Predictedblue native page | FSW = 0.0308
| Class C:plastid | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G55220
| Predictedpull down | FSW = 0.1647
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
| AT2G05990
| Predictedpull down | FSW = 0.0741
| Class C:plastid | MOD1 (MOSAIC DEATH 1) ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (NADH)/ ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE/ OXIDOREDUCTASE |
| AT2G22230
| Predictedpull down | FSW = 0.1449
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
| AT4G02260
| Predictedpull down | FSW = 0.2455
| Class C:plastid | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
| ATCG00180 | Predictedpull down | FSW = 0.2551
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
| ATCG00740 | Predictedpull down | FSW = 0.1623
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00160 | Predictedpull down | FSW = 0.2599
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00380 | Predictedpull down | FSW = 0.3096
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
| ATCG00830 | Predictedpull down | FSW = 0.2430
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| AT4G37910
| Predictedblue native page | FSW = 0.1027
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT1G53000
| Predictedpull down | FSW = 0.0748
| Unknown | CYTIDYLYLTRANSFERASE FAMILY |
| AT5G63680
| Predictedpull down | FSW = 0.0162
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT4G38680
| Predictedpull down | FSW = 0.2552
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT2G30920
| Predictedpull down | FSW = 0.1053
| Unknown | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE |
| AT1G01290
| Predictedpull down | FSW = 0.1508
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
| AT3G49080
| Predictedpull down | FSW = 0.2300
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
| AT1G32490
| Predictedpull down | FSW = 0.2102
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G17510
| Predictedpull down | FSW = 0.1764
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT3G22310
| Predictedpull down | FSW = 0.2513
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
| AT3G24560
| Predictedpull down | FSW = 0.2812
| Unknown | RSY3 (RASPBERRY 3) |
| AT4G09140
| Predictedpull down | FSW = 0.0216
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
| AT5G23070
| Predictedpull down | FSW = 0.0889
| Unknown | THYMIDINE KINASE PUTATIVE |
| AT5G51140
| Predictedpull down | FSW = 0.3011
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT5G63120
| Predictedpull down | FSW = 0.2283
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
| AT5G64650
| Predictedpull down | FSW = 0.2026
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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