Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35160 - ( LOCATED IN integral to membrane Golgi apparatus EXPRESSED IN 24 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nonaspanin (TM9SF) (InterProIPR004240) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G126501) Has 1053 Blast hits to 1004 proteins in 163 species Archae - 0 Bacteria - 0 Metazoa - 478 Fungi - 143 Plants - 250 Viruses - 0 Other Eukaryotes - 182 (source NCBI BLink) )
15 Proteins interacs with AT5G35160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10840 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3480
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT3G13772 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3480
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT5G25100 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3480
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT5G37310 | PredictedPhylogenetic profile method | FSW = 0.4734
| Class C:golgi | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLANT-TYPE CELL WALL EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ENDOMEMBRANE PROTEIN 70 PUTATIVE (TAIRAT1G146701) HAS 1019 BLAST HITS TO 986 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 444 FUNGI - 148 PLANTS - 242 VIRUSES - 0 OTHER EUKARYOTES - 185 (SOURCE NCBI BLINK) |
AT1G55130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3043
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT3G06530 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | BINDING |
AT5G56350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1364
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G53960 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1336
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G07180 | PredictedReconstituted Complex | FSW = 0.0963
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G47990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1409
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G27040 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationSynthetic Lethality | FSW = 0.0896
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G80710 | Predictedsynthetic growth defect | FSW = 0.0340
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G53030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0648
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT2G24170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3480
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454