Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35410 - ( SOS2 (SALT OVERLY SENSITIVE 2) kinase/ protein kinase )
34 Proteins interacs with AT5G35410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | Experimentalinteraction detection method | FSW = 0.0509
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G38510 | Experimentalinteraction detection method | FSW = 0.0586
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT1G76030 | Experimentalinteraction detection method | FSW = 0.0780
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT1G20260 | Experimentalinteraction detection method | FSW = 0.0505
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G12840 | Experimentalinteraction detection method | FSW = 0.1042
| Unknown | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G01390 | Experimentalinteraction detection method | FSW = 0.0746
| Unknown | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT4G11150 | Experimentalinteraction detection method | FSW = 0.0188
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G38170 | Experimentaltwo hybrid | FSW = 0.0250
| Unknown | CAX1 (CATION EXCHANGER 1) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT4G26570 | Experimentaltwo hybrid | FSW = 0.0781
| Unknown | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT5G55990 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0656
| Unknown | CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING |
AT1G20620 | Experimental | FSW = 0.0379
| Unknown | CAT3 (CATALASE 3) CATALASE |
AT5G63310 | Experimentalpull down | FSW = 0.0144
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT2G01980 | ExperimentalSos-recruitment assay | FSW = 0.0234
| Unknown | SOS1 (SALT OVERLY SENSITIVE 1) SODIUMHYDROGEN ANTIPORTER |
AT4G35090 | Experimental | FSW = 0.0456
| Unknown | CAT2 (CATALASE 2) CATALASE |
AT2G47450 | Experimental | FSW = 0.0262
| Unknown | CAO (CHAOS) CHROMATIN BINDING |
AT3G43810 | Experimentalprotein array | FSW = 0.0208
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0233
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G17615 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0758
| Unknown | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT5G47100 | Experimental | FSW = 0.0342
| Unknown | CBL9 CALCIUM ION BINDING |
AT3G50670 | Experimentalconfocal microscopyinteraction detection method | FSW = 0.0072
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G02680 | Experimentalprotein array | FSW = 0.0035
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G09140 | Experimentalpull down | FSW = 0.0290
| Unknown | SF2/ASF-LIKE SPLICING MODULATOR (SRP30) |
AT1G02840 | Experimentalprotein kinase assay | FSW = 0.0410
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G24270 | Experimentaltwo hybridtwo hybridReconstituted Complextwo hybridpull downpull downfilter bindingprotein kinase assayfar western blottingtwo hybridReconstituted Complexin vitro | FSW = 0.0806
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G01420 | Experimentalprotein complementation assay | FSW = 0.0580
| Unknown | CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING |
AT4G33000 | Experimentalpull downfilter bindingprotein kinase assayReconstituted Complexprotein complementation assayin vitro | FSW = 0.0721
| Unknown | CBL10 (CALCINEURIN B-LIKE 10) CALCIUM ION BINDING |
AT5G57050 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0282
| Unknown | ABI2 (ABA INSENSITIVE 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G39670 | Experimentalprotein array | FSW = 0.2290
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G14640 | Experimentalprotein array | FSW = 0.0379
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.0294
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT3G51920 | Experimentalprotein array | FSW = 0.0317
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.0096
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT4G26560 | Experimental | FSW = 0.1353
| Unknown | CBL7 (CALCINEURIN B-LIKE 7) CALCIUM ION BINDING |
AT4G26080 | ExperimentalReconstituted Complex | FSW = 0.0127
| Unknown | ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454