Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35530 - ( 40S ribosomal protein S3 (RPS3C) )
44 Proteins interacs with AT5G35530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G24770 | Predictedtwo hybridtwo hybrid | FSW = 0.0309
| Class C:nucleus | RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING |
AT5G04990 | Predictedtwo hybridtwo hybrid | FSW = 0.0106
| Class C:nucleus | SAD1/UNC-84 PROTEIN-RELATED |
AT2G36010 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0097
| Class C:nucleus | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0062
| Class C:nucleus | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G34390 | Predictedtwo hybrid | FSW = 0.0110
| Class C:nucleus | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G31610 | PredictedPhylogenetic profile method | FSW = 0.0335
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0027
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G26570 | Predictedtwo hybridtwo hybrid | FSW = 0.0426
| Unknown | PHT21 (PHOSPHATE TRANSPORTER 21) LOW AFFINITY PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G22450 | Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT1G04860 | Predictedtwo hybrid | FSW = 0.0681
| Unknown | UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2) UBIQUITIN-SPECIFIC PROTEASE |
AT3G53870 | PredictedPhylogenetic profile method | FSW = 0.0055
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT2G20040 | Predictedtwo hybrid | FSW = 0.0681
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G10430 | Predictedtwo hybridtwo hybrid | FSW = 0.0204
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G25754 | Predictedtwo hybridtwo hybrid | FSW = 0.0106
| Unknown | UNKNOWN PROTEIN |
AT2G26300 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT5G40660 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0340
| Unknown | ATP12 PROTEIN-RELATED |
AT4G00900 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE |
AT3G49990 | Predictedtwo hybrid | FSW = 0.0567
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LOW TEMPERATURE VIABILITY PROTEIN (INTERPROIPR007307) HAS 1404 BLAST HITS TO 1163 PROTEINS IN 173 SPECIES ARCHAE - 5 BACTERIA - 61 METAZOA - 489 FUNGI - 146 PLANTS - 69 VIRUSES - 17 OTHER EUKARYOTES - 617 (SOURCE NCBI BLINK) |
AT2G14045 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | UNKNOWN PROTEIN |
AT4G17760 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT4G37280 | Predictedtwo hybrid | FSW = 0.1086
| Unknown | MRG FAMILY PROTEIN |
AT5G08100 | Predictedtwo hybridtwo hybrid | FSW = 0.0486
| Unknown | L-ASPARAGINASE / L-ASPARAGINE AMIDOHYDROLASE |
AT5G25800 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0208
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT1G19310 | Predictedtwo hybridtwo hybrid | FSW = 0.0213
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G71840 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G26830 | Predictedtwo hybridtwo hybrid | FSW = 0.0179
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT2G32780 | Predictedtwo hybrid | FSW = 0.0486
| Unknown | UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT3G13170 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC |
AT3G54230 | Predictedtwo hybridtwo hybrid | FSW = 0.0214
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G34370 | Predictedtwo hybrid | FSW = 0.0087
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G02820 | Predictedtwo hybridtwo hybrid | FSW = 0.0421
| Unknown | RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING |
AT5G17290 | Predictedtwo hybridtwo hybrid | FSW = 0.0200
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0396
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT1G34760 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G33080 | PredictedPhenotypic Enhancement | FSW = 0.0214
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G23290 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0076
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT2G16090 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT5G64550 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | LORICRIN-RELATED |
AT2G23780 | Predictedtwo hybrid | FSW = 0.0284
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G39760 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | BPM3 PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454