Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G35530 - ( 40S ribosomal protein S3 (RPS3C) )

44 Proteins interacs with AT5G35530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G24770

Predicted

two hybrid

two hybrid

FSW = 0.0309

Class C:

nucleus

RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING
AT5G04990

Predicted

two hybrid

two hybrid

FSW = 0.0106

Class C:

nucleus

SAD1/UNC-84 PROTEIN-RELATED
AT2G36010

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0097

Class C:

nucleus

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G22220

Predicted

two hybrid

FSW = 0.0062

Class C:

nucleus

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G34390

Predicted

two hybrid

FSW = 0.0110

Class C:

nucleus

XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G31610

Predicted

Phylogenetic profile method

FSW = 0.0335

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT3G62870

Predicted

two hybrid

synthetic growth defect

FSW = 0.0027

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G58500

Predicted

two hybrid

FSW = 0.0327

Unknown

PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G26570

Predicted

two hybrid

two hybrid

FSW = 0.0426

Unknown

PHT21 (PHOSPHATE TRANSPORTER 21) LOW AFFINITY PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G22450

Predicted

two hybrid

two hybrid

FSW = 0.0262

Unknown

COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE
AT1G04860

Predicted

two hybrid

FSW = 0.0681

Unknown

UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2) UBIQUITIN-SPECIFIC PROTEASE
AT3G53870

Predicted

Phylogenetic profile method

FSW = 0.0055

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT2G20040Predicted

two hybrid

FSW = 0.0681

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G10430

Predicted

two hybrid

two hybrid

FSW = 0.0204

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G25754Predicted

two hybrid

two hybrid

FSW = 0.0106

Unknown

UNKNOWN PROTEIN
AT2G26300

Predicted

two hybrid

FSW = 0.0063

Unknown

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT5G40660

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0340

Unknown

ATP12 PROTEIN-RELATED
AT4G00900

Predicted

two hybrid

FSW = 0.0179

Unknown

ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE
AT3G49990

Predicted

two hybrid

FSW = 0.0567

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LOW TEMPERATURE VIABILITY PROTEIN (INTERPROIPR007307) HAS 1404 BLAST HITS TO 1163 PROTEINS IN 173 SPECIES ARCHAE - 5 BACTERIA - 61 METAZOA - 489 FUNGI - 146 PLANTS - 69 VIRUSES - 17 OTHER EUKARYOTES - 617 (SOURCE NCBI BLINK)
AT2G14045

Predicted

two hybrid

FSW = 0.0179

Unknown

UNKNOWN PROTEIN
AT4G17760

Predicted

two hybrid

FSW = 0.0122

Unknown

DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III
AT4G37280

Predicted

two hybrid

FSW = 0.1086

Unknown

MRG FAMILY PROTEIN
AT5G08100

Predicted

two hybrid

two hybrid

FSW = 0.0486

Unknown

L-ASPARAGINASE / L-ASPARAGINE AMIDOHYDROLASE
AT5G25800

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0208

Unknown

EXONUCLEASE FAMILY PROTEIN
AT1G19310

Predicted

two hybrid

two hybrid

FSW = 0.0213

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G71840

Predicted

two hybrid

FSW = 0.0417

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G26830

Predicted

two hybrid

two hybrid

FSW = 0.0179

Unknown

EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT2G32780

Predicted

two hybrid

FSW = 0.0486

Unknown

UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT3G13170

Predicted

two hybrid

FSW = 0.0395

Unknown

ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC
AT3G54230

Predicted

two hybrid

two hybrid

FSW = 0.0214

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT4G34370

Predicted

two hybrid

FSW = 0.0087

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G02820

Predicted

two hybrid

two hybrid

FSW = 0.0421

Unknown

RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT5G17290

Predicted

two hybrid

two hybrid

FSW = 0.0200

Unknown

APG5 (AUTOPHAGY 5) TRANSPORTER
AT5G19000

Predicted

two hybrid

FSW = 0.0396

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT5G57815

Predicted

two hybrid

FSW = 0.0216

Unknown

CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE
AT1G34760

Predicted

Affinity Capture-MS

FSW = 0.0288

Unknown

GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G33080

Predicted

Phenotypic Enhancement

FSW = 0.0214

Unknown

PROTEIN KINASE PUTATIVE
AT4G33070

Predicted

Affinity Capture-MS

FSW = 0.0057

Unknown

PYRUVATE DECARBOXYLASE PUTATIVE
AT5G23290

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G24670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0076

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT2G16090

Predicted

two hybrid

FSW = 0.0068

Unknown

ZINC FINGER PROTEIN-RELATED
AT5G64550

Predicted

two hybrid

FSW = 0.0122

Unknown

LORICRIN-RELATED
AT2G23780

Predicted

two hybrid

FSW = 0.0284

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G39760

Predicted

two hybrid

FSW = 0.0357

Unknown

BPM3 PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454