Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35980 - ( protein kinase family protein )
37 Proteins interacs with AT5G35980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04520 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | THA2 (THREONINE ALDOLASE 2) THREONINE ALDOLASE |
AT3G19980 | Predictedinterologs mapping | FSW = 0.0096
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G02520 | PredictedAffinity Capture-Western | FSW = 0.0258
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G44050 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE |
AT5G53460 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT5G38480 | PredictedAffinity Capture-Western | FSW = 0.0246
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedAffinity Capture-Western | FSW = 0.0447
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G14120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0115
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G32090 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G60740 | Predictedinteraction prediction | FSW = 0.0878
| Unknown | PEROXIREDOXIN TYPE 2 PUTATIVE |
AT3G21700 | Predictedinterologs mapping | FSW = 0.0294
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedinterologs mapping | FSW = 0.0290
| Unknown | SGP1 GTP BINDING |
AT5G65720 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE |
AT2G31970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0220
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G20570 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0388
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G42830 | Predictedtwo hybrid | FSW = 0.0266
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0215
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G02080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0778
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G65970 | PredictedAffinity Capture-MS | FSW = 0.0896
| Unknown | TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE |
AT3G07270 | Predictedbiochemical | FSW = 0.0762
| Unknown | GTP CYCLOHYDROLASE I |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G26640 | PredictedAffinity Capture-MS | FSW = 0.1385
| Unknown | LWD2 (LIGHT-REGULATED WD 2) NUCLEOTIDE BINDING |
AT5G10960 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0407
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | F-BOX FAMILY PROTEIN |
AT4G08500 | Predictedbiochemical | FSW = 0.0332
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT1G12910 | PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | ATAN11 (ANTHOCYANIN11) NUCLEOTIDE BINDING |
AT1G65990 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | UNKNOWN PROTEIN |
AT1G15920 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0449
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G50370 | Predictedinterologs mapping | FSW = 0.0234
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G53570 | Predictedinterologs mapping | FSW = 0.0610
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G02170 | Predictedtwo hybridinteraction prediction | FSW = 0.0878
| Unknown | AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G06600 | Predictedinteraction prediction | FSW = 0.0124
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT2G32070 | Predictedinteraction prediction | FSW = 0.0894
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G56450 | Predictedinteraction prediction | FSW = 0.0095
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G69350 | PredictedGene fusion method | FSW = 0.0229
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454