Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35980 - ( protein kinase family protein )

37 Proteins interacs with AT5G35980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04520

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

THA2 (THREONINE ALDOLASE 2) THREONINE ALDOLASE
AT3G19980

Predicted

interologs mapping

FSW = 0.0096

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G02520

Predicted

Affinity Capture-Western

FSW = 0.0258

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G44050

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE
AT5G53460

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

GLT1 GLUTAMATE SYNTHASE (NADH)
AT5G38480

Predicted

Affinity Capture-Western

FSW = 0.0246

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160

Predicted

Affinity Capture-Western

FSW = 0.0447

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G14120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0115

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G32090

Predicted

Affinity Capture-MS

FSW = 0.0187

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G60740

Predicted

interaction prediction

FSW = 0.0878

Unknown

PEROXIREDOXIN TYPE 2 PUTATIVE
AT3G21700

Predicted

interologs mapping

FSW = 0.0294

Unknown

SGP2 GTP BINDING
AT5G54840

Predicted

interologs mapping

FSW = 0.0290

Unknown

SGP1 GTP BINDING
AT5G65720

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE
AT2G31970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0220

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G20570

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0388

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT3G42830

Predicted

two hybrid

FSW = 0.0266

Unknown

RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT2G36200

Predicted

synthetic growth defect

FSW = 0.0215

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G02080Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0778

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G65970

Predicted

Affinity Capture-MS

FSW = 0.0896

Unknown

TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE
AT3G07270

Predicted

biochemical

FSW = 0.0762

Unknown

GTP CYCLOHYDROLASE I
AT3G11910

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G26640

Predicted

Affinity Capture-MS

FSW = 0.1385

Unknown

LWD2 (LIGHT-REGULATED WD 2) NUCLEOTIDE BINDING
AT5G10960

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0407

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G67190

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

F-BOX FAMILY PROTEIN
AT4G08500

Predicted

biochemical

FSW = 0.0332

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT1G12910

Predicted

Affinity Capture-MS

FSW = 0.0976

Unknown

ATAN11 (ANTHOCYANIN11) NUCLEOTIDE BINDING
AT1G65990

Predicted

Affinity Capture-MS

FSW = 0.0364

Unknown

TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN
AT1G10090

Predicted

Affinity Capture-MS

FSW = 0.0053

Unknown

UNKNOWN PROTEIN
AT1G15920

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0449

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G50370

Predicted

interologs mapping

FSW = 0.0234

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G53570

Predicted

interologs mapping

FSW = 0.0610

Unknown

MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G02170

Predicted

two hybrid

interaction prediction

FSW = 0.0878

Unknown

AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE
AT5G06600

Predicted

interaction prediction

FSW = 0.0124

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G32070

Predicted

interaction prediction

FSW = 0.0894

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G56450

Predicted

interaction prediction

FSW = 0.0095

Unknown

PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G69350

Predicted

Gene fusion method

FSW = 0.0229

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454