Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G36880 - ( acetyl-CoA synthetase putative / acetate-CoA ligase putative )
34 Proteins interacs with AT5G36880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | PredictedAffinity Capture-MS | FSW = 0.0135
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G31610 | PredictedAffinity Capture-MS | FSW = 0.0421
| Class C:plastid | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.0500
| Class C:plastid | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G22170 | PredictedAffinity Capture-MS | FSW = 0.0237
| Class C:plastid | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT3G60750 | PredictedAffinity Capture-MS | FSW = 0.0592
| Class C:plastid | TRANSKETOLASE PUTATIVE |
AT2G45290 | PredictedAffinity Capture-MS | FSW = 0.0729
| Class C:plastid | TRANSKETOLASE PUTATIVE |
AT1G67120 | PredictedAffinity Capture-MS | FSW = 0.0243
| Class C:plastid | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0490
| Class C:plastid | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G66580 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G14320 | Predictedtwo hybrid | FSW = 0.0288
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0510
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | HSP91 ATP BINDING |
AT3G50670 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0033
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G19280 | PredictedGene fusion method | FSW = 0.0239
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G21790 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | GTP BINDING |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1698
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.1878
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0108
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G03430 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0089
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454