Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37290 - ( armadillo/beta-catenin repeat family protein )

12 Proteins interacs with AT5G37290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G47120

Predicted

two hybrid

two hybrid

FSW = 0.0667

Unknown

ATBI1 (BAX INHIBITOR 1)
AT4G15940

Predicted

two hybrid

FSW = 0.1500

Unknown

FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
AT1G80370

Predicted

two hybrid

FSW = 0.0485

Unknown

CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G11300

Predicted

two hybrid

FSW = 0.0248

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G47130

Predicted

two hybrid

FSW = 0.0462

Unknown

BAX INHIBITOR-1 FAMILY / BI-1 FAMILY
AT5G49510

Predicted

two hybrid

two hybrid

FSW = 0.0078

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G55670

Predicted

two hybrid

FSW = 0.0627

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G55000

Predicted

two hybrid

FSW = 0.0711

Unknown

FIP2 PROTEIN BINDING / VOLTAGE-GATED POTASSIUM CHANNEL
AT2G29525

Predicted

two hybrid

FSW = 0.1778

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHATIDIC ACID PHOSPHATASE-RELATED / PAP2-RELATED (TAIRAT3G540201) HAS 352 BLAST HITS TO 352 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 245 FUNGI - 0 PLANTS - 50 VIRUSES - 0 OTHER EUKARYOTES - 53 (SOURCE NCBI BLINK)
AT3G52800

Predicted

two hybrid

FSW = 0.2133

Unknown

ZINC FINGER (AN1-LIKE) FAMILY PROTEIN
AT3G16700

Predicted

two hybrid

FSW = 0.2045

Unknown

FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
AT1G47230

Predicted

two hybrid

Co-expression

FSW = 0.0314

Unknown

CYCLIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454