Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37340 - ( zinc finger (ZPR1-type) family protein )

16 Proteins interacs with AT5G37340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.0360

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT1G22840

Predicted

two hybrid

FSW = 0.0667

Unknown

CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0061

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G38740

Predicted

Synthetic Lethality

FSW = 0.0327

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G60390

Predicted

interologs mapping

FSW = 0.0375

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940Predicted

two hybrid

FSW = 0.1118

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0220

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT1G53750

Predicted

two hybrid

FSW = 0.0321

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT2G47770

Predicted

two hybrid

FSW = 0.1636

Unknown

BENZODIAZEPINE RECEPTOR-RELATED
AT5G20570

Predicted

two hybrid

FSW = 0.0517

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0317

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G55310

Predicted

two hybrid

FSW = 0.0257

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT2G15790

Predicted

interologs mapping

FSW = 0.0575

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G25230

Predicted

interologs mapping

FSW = 0.0353

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0554

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT5G22480

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.4598

Unknown

ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454