Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37640 - ( UBQ9 protein binding )

16 Proteins interacs with AT5G37640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14880

Predicted

Gene fusion method

FSW = 0.0281

Class C:

vacuole

nucleus

OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT5G03240Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2722

Class C:

vacuole

UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING
AT4G02890Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2236

Class C:

vacuole

UBQ14 PROTEIN BINDING
AT1G64040

Predicted

Gene fusion method

FSW = 0.1059

Class C:

nucleus

TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G23430

Predicted

Gene fusion method

FSW = 0.0209

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G44100

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

CKL7 (CASEIN KINASE I-LIKE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G18380

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT1G17810

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT1G65350

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3130

Unknown

UBQ13 PROTEIN BINDING
AT5G20620Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2408

Unknown

UBQ4 PROTEIN BINDING
AT4G05320

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0703

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT5G01670

Predicted

Gene fusion method

FSW = 0.0168

Unknown

ALDOSE REDUCTASE PUTATIVE
AT4G11240

Predicted

Gene fusion method

FSW = 0.0900

Unknown

TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G29260

Predicted

Gene fusion method

FSW = 0.0395

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT4G09750

Predicted

Gene fusion method

FSW = 0.0972

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454