Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G37850 - ( SOS4 (SALT OVERLY SENSITIVE 4) kinase/ pyridoxal kinase )

30 Proteins interacs with AT5G37850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.4377

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G13080

Predicted

Affinity Capture-MS

FSW = 0.2640

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G20390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4602

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.4906

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT2G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4096

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.4364

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.4928

Unknown

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G61430

Predicted

Affinity Capture-MS

FSW = 0.4274

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT3G09740

Predicted

Affinity Capture-MS

FSW = 0.4447

Unknown

SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0015

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G63290

Predicted

Affinity Capture-MS

FSW = 0.5849

Unknown

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.4699

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G35310

Predicted

Affinity Capture-MS

FSW = 0.4916

Unknown

CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.2854

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2387

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3630

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.1017

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G53180

Predicted

pull down

FSW = 0.0606

Unknown

CATALYTIC/ GLUTAMATE-AMMONIA LIGASE
AT4G36800

Predicted

Affinity Capture-MS

FSW = 0.6033

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.2308

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.4334

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.3479

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.4020

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16090

Predicted

Affinity Capture-MS

FSW = 0.6703

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.2539

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.2728

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3540

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G52820

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.4120

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G15770

Predicted

interaction prediction

FSW = 0.0135

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454