Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G38030 - ( MATE efflux family protein )
21 Proteins interacs with AT5G38030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedSynthetic Rescue | FSW = 0.0299
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G10350 | PredictedAffinity Capture-Western | FSW = 0.0314
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G39290 | PredictedSynthetic Lethality | FSW = 0.0553
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G36490 | Predictedsynthetic growth defect | FSW = 0.0768
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G53870 | PredictedSynthetic Rescue | FSW = 0.0370
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT2G37790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0547
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0463
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G17800 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | ARAC1 GTP BINDING |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0926
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G11230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0743
| Unknown | YIPPEE FAMILY PROTEIN |
AT4G25950 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G25260 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G26690 | PredictedSynthetic Rescue | FSW = 0.0571
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29970 | PredictedAffinity Capture-Western | FSW = 0.0385
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G80530 | PredictedSynthetic Lethality | FSW = 0.0800
| Unknown | NODULIN FAMILY PROTEIN |
AT2G04660 | PredictedSynthetic Lethality | FSW = 0.0524
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G27110 | PredictedSynthetic Rescue | FSW = 0.0389
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT5G17860 | PredictedSynthetic Rescue | FSW = 0.0189
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G58380 | PredictedColocalization | FSW = 0.0303
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G23300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0758
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G12950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0664
| Unknown | MATE EFFLUX FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454